PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G22044

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 730aa MW: 80455.8 Da PI: 6.8476

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G22044	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.9	7.9e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + +++ Ro07_G22044 126 FAKTLTQSDANNGGGFSVPRFCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNNKKLVAGDSIVFF--RAENGD 219 89*******************999986445444..8999*****************************************..348888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Ro07_G22044 220 LCVGIRRA 227 9**996 PP
2	Auxin_resp	112.1	5.5e-37	287	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++++FevvY+Prast+eF+vk++ v++a++++++ G Rfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+ Ro07_G22044 287 AATLAVSGQPFEVVYYPRASTPEFCVKASAVRAAMQIRWCSGIRFKMPFETEDSSRISWfMGTISSVHVADPIRWPDSPWRLLQ 370 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MITIMNSVRE PMKKSNNSEK GLDSQFWHAC AGGMVQMPPI NSKVFYFPQG HAEYAHGNVD 60 FGNSRIPALI LSRISAIRYM ADPETDEVYA KMRLVPVRES GFDLEDDGVV GNNNGVVENP 120 EKPTSFAKTL TQSDANNGGG FSVPRFCAET IFPRLDYSAE PPVQTILAKD VHGEIWKFRH 180 IYRGTPRRHL LTTGWSNFVN NKKLVAGDSI VFFRAENGDL CVGIRRAKRG IGGGPEYPCG 240 WNTPAGNSCS QYGGYSGFSR ENGNKPMDKN SNGTTRGRVR AEHVIEAATL AVSGQPFEVV 300 YYPRASTPEF CVKASAVRAA MQIRWCSGIR FKMPFETEDS SRISWFMGTI SSVHVADPIR 360 WPDSPWRLLQ VAWDEPDLLQ NVRCVSPWLV ELVSSIPAID LSPFSPPRKK LRLQQNPDYS 420 LISQLPMPPV YGNFLHSSNP LCNLSDNIPA GIQGARQAHF GVSSSNLLNK LHSGLIPVGF 480 QQLGHVAPPG IPGRNFMRIA ETNENISCCV TEGIPYHSLK DNDEIKTPHI LLFGQLIVTG 540 EQMSKSSSGD DSSSNPEKTG NSSDGSGSAL HRNGSVENCS DGGTPWDKDH QKNDHNLETG 600 LCKVFIESGD VGTLDLSVFR SYQELYRKLA NMFGKENSVM LSKVLYRDAA GAVRHTGDEP 660 FSEFLKTARG LYMIEGEETL QLVLVNQLDK PPVHIKLTLF HEKAVTNGEL GVGSFGGLIY 720 VYNDQTDKDS

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MITIMNSVRE PMKKSNNSEK GLDSQFWHAC AGGMVQMPPI NSKVFYFPQG HAEYAHGNVD  60
FGNSRIPALI LSRISAIRYM ADPETDEVYA KMRLVPVRES GFDLEDDGVV GNNNGVVENP  120
EKPTSFAKTL TQSDANNGGG FSVPRFCAET IFPRLDYSAE PPVQTILAKD VHGEIWKFRH  180
IYRGTPRRHL LTTGWSNFVN NKKLVAGDSI VFFRAENGDL CVGIRRAKRG IGGGPEYPCG  240
WNTPAGNSCS QYGGYSGFSR ENGNKPMDKN SNGTTRGRVR AEHVIEAATL AVSGQPFEVV  300
YYPRASTPEF CVKASAVRAA MQIRWCSGIR FKMPFETEDS SRISWFMGTI SSVHVADPIR  360
WPDSPWRLLQ VAWDEPDLLQ NVRCVSPWLV ELVSSIPAID LSPFSPPRKK LRLQQNPDYS  420
LISQLPMPPV YGNFLHSSNP LCNLSDNIPA GIQGARQAHF GVSSSNLLNK LHSGLIPVGF  480
QQLGHVAPPG IPGRNFMRIA ETNENISCCV TEGIPYHSLK DNDEIKTPHI LLFGQLIVTG  540
EQMSKSSSGD DSSSNPEKTG NSSDGSGSAL HRNGSVENCS DGGTPWDKDH QKNDHNLETG  600
LCKVFIESGD VGTLDLSVFR SYQELYRKLA NMFGKENSVM LSKVLYRDAA GAVRHTGDEP  660
FSEFLKTARG LYMIEGEETL QLVLVNQLDK PPVHIKLTLF HEKAVTNGEL GVGSFGGLIY  720
VYNDQTDKDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein