PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G21102
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 1089aa    MW: 121290 Da    PI: 7.5553
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G21102genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.14.3e-105736323796
                  EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  t+ +  g+sWe++ + + k  + + +k Wk F ++n+Lk+gD +vF+l++ s+++lv++v
  Ro07_G21102 573 TVLTFAGKSWEMTWNGSHKTAKSLDRKSWKAFIDDNNLKVGDGCVFELTECSSTRLVFRV 632
                  566778********554444458889*********************9866787777765 PP
2B342.11.6e-13826917196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ +l +s+++ +++l +p k  + +   +  s   t+ +  g+ We++++   k  +++ ++ Wk+Fv++n+Lk+gD +vF+l++ s+++lv++v
  Ro07_G21102 826 FDIILAKSHTNPKCQLLIPTKLHQVI---PSHS-VPTVLTFGGKNWEMTCNAAHKTHKFLDRSSWKQFVNDNNLKVGDGCVFELMECSSTKLVFRV 917
                  667788999999*******9986444...2223.4578899*********888888889999*********************9976888887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1089 aa     Download sequence    
MADAAQSSEN PTIELHGNEF WPLSGKPFFD IILTKSHVKP IYQLGIPAKL YPVLPPGSIP  60
TVLTVGSKSW ETMYNGANRL KQFDRPSWGA FVNDNDLKAG DGCVFELMEC SSAKLVFRVQ  120
ILRGDIPAEL LENCIGLSEF LMKTFNNNKL IFVKSQLGQA EVTEMADSAQ SSANPTIELH  180
GDEFWPLSGR PFFDIILTKS HVKPIYQMEI PAKLDPELPA GTSVPMVLTF GDKSWEMTYN  240
GTKRLKLVDR HSWRAFVDDN NLKAGDGCIF EPTGCDSNST NVLFRVQILR GDIPVELVEK  300
YSRGMANTPN YKNPPSEWDS WFANFEVDFS KVRSWMRSAC FNIYILPDGV SHLGVSIRYD  360
MIDLSLQQGT FAAYISAAGL RLIIIPCSVP ATMDWSVLDT VSRVWQKNSA AVRGVRGDQV  420
AAPTTRPSDK NEKGKAVAKI GPQSSTASYE LKLLFWSRDH LTPHLSIYYP MHFSTIQHLS  480
PEDHLQRCLK KRFVLLKAFP KTFNFVEAED TEMADSAQPS SNPTIELHGD EFWPLSGNPF  540
FDVLLSNSHL KPFYQMAIPS KLHPILPSCS IPTVLTFAGK SWEMTWNGSH KTAKSLDRKS  600
WKAFIDDNNL KVGDGCVFEL TECSSTRLVF RVQILRGDIP AELLAKVIGE DAEKSIVLNK  660
IKSASPSNTA LTESLVKCPI AFCVGFHSRS ASRDGSSSKA SSSSMPSTPR SEGREILQSC  720
NLNSISFSEL KNATRNFHPD SVLGEGGFGS VFKGWIDEST LRATKAGTGM DCKISWPSLR  780
GVEKLIQGNF FVDHPEMGDL EGQSSSNPTI DLGGDEFWPL SGKPFFDIIL AKSHTNPKCQ  840
LLIPTKLHQV IPSHSVPTVL TFGGKNWEMT CNAAHKTHKF LDRSSWKQFV NDNNLKVGDG  900
CVFELMECSS TKLVFRVQIL RDVVKILLLR NNFRLKAALS LYGVAILKSF FLGSAKRKKN  960
YVLISSLAGG QAEYVHQIFL SSNFKYTMEN CMKGIKILKL GGLTQLNFTP STSIHSHLPG  1020
QELGDDFDPS WRTFIDDNNV EGWMHVKKKE LIFRVQILRG DISSELVNKV NAESRDASII  1080
VNDDDDTNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-07B3 family protein