PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G19867

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 568aa MW: 64902.5 Da PI: 7.6142

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G19867	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.8	7.6e-18	70	180	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....................tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY Y+ +GFsvr++k k+ r+++i + +vCs+eg r+++ +k ++++++ r +tr++C+a+++ + k +g++ Ro07_G19867 70 DFYGLYSLAIGFSVRRHKFDKN-REETIRRIILVCSREGIRRSQARKkqksttdlnnvshgatstnggKDHSHHARRVTRCNCEARITFLLCKsRGVY 166 69**************9999.5555*********9999888899************99999999************9999 PP FAR1 77 evtkleleHnHela 90 + t+++++HnHel+ Ro07_G19867 167 YATEFVTQHNHELV 180 **********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MDGITDSCSE SENDGGISPN HHSDWTRESQ ADDLDDEGTD CLQYNGKKYE DLQLEDLNGV 60 EFKTVDEVED FYGLYSLAIG FSVRRHKFDK NREETIRRII LVCSREGIRR SQARKKQKST 120 TDLNNVSHGA TSTNGGKDHS HHARRVTRCN CEARITFLLC KSRGVYYATE FVTQHNHELV 180 RREHIRFLRS HRRVMDHDIA KKDFFHLIYA DPVIGNHLRC MQEQIAKILT HDVFMLVKDH 240 IAFESKFVIY GREHMIDRNA LLIHMSQYNK PERRWVVSYN NSPNNASFIC SCNLFESDGI 300 SCCHIFAAMK SLMMTSFPKF LIKRRWTKNA AQSTNIHTTK GFPDNVVRVA RYGEMMSKCA 360 QLCFAASFSD EGYESTIDQL RRLNVRSKRF PLEAEHNSED ITNGLHKNVV KDPVVCRTKG 420 ANAKSPIEKE SGRSKPSHVC GFCNRPGHNI RTCEIANESQ NPVGIGASKV TRTSFNPNFN 480 PCDPVQDNTE SRAVWGDLSD DDSDDIIHHR GEAEKFDFYA GYEDHPNLVS GSMRTGTLNR 540 SPWSSLHSRH SSTDNITASH SWPFHNTQ

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MDGITDSCSE SENDGGISPN HHSDWTRESQ ADDLDDEGTD CLQYNGKKYE DLQLEDLNGV  60
EFKTVDEVED FYGLYSLAIG FSVRRHKFDK NREETIRRII LVCSREGIRR SQARKKQKST  120
TDLNNVSHGA TSTNGGKDHS HHARRVTRCN CEARITFLLC KSRGVYYATE FVTQHNHELV  180
RREHIRFLRS HRRVMDHDIA KKDFFHLIYA DPVIGNHLRC MQEQIAKILT HDVFMLVKDH  240
IAFESKFVIY GREHMIDRNA LLIHMSQYNK PERRWVVSYN NSPNNASFIC SCNLFESDGI  300
SCCHIFAAMK SLMMTSFPKF LIKRRWTKNA AQSTNIHTTK GFPDNVVRVA RYGEMMSKCA  360
QLCFAASFSD EGYESTIDQL RRLNVRSKRF PLEAEHNSED ITNGLHKNVV KDPVVCRTKG  420
ANAKSPIEKE SGRSKPSHVC GFCNRPGHNI RTCEIANESQ NPVGIGASKV TRTSFNPNFN  480
PCDPVQDNTE SRAVWGDLSD DDSDDIIHHR GEAEKFDFYA GYEDHPNLVS GSMRTGTLNR  540
SPWSSLHSRH SSTDNITASH SWPFHNTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-10	FAR1 family protein