PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G19644
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 302aa    MW: 34111 Da    PI: 5.2504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G19644genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19103153256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                  +++GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa  +++a+ +l+g+
  Ro07_G19644 103 KFRGVRQRP-WGKWAAEIRDPV----RrTRVWLGTFQTAEEAALVYDRAAIQLRGH 153
                  89*******.**********63....45**************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDSNHPTKYT EKTTVTNKLV KHFPKSNVGL PKIVRISVTD EDATDTSSDE EPDHNSWNQQ  60
QHNRLTKRLI NEVRIEEESE ALRMLLPKNH KTTTAQPLPE GRKFRGVRQR PWGKWAAEIR  120
DPVRRTRVWL GTFQTAEEAA LVYDRAAIQL RGHNALTNII TPPSKTPSKI AGINISEDHD  180
SCSNNSGSIH ETIVMDEYDS GKECQSVRSP TSVLSGGSDN DTHFVSDAHF IKDCYFEAHS  240
PTEPIFFGAT EPILLEEMSL VPETMLRDDL SDISLDLVGD FRSCKWNVED FFQDQCGNSV  300
MV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-35ERF family protein