PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G18572
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 404aa    MW: 46126.8 Da    PI: 9.2873
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G18572genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.3e-1798167272
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek 72 
                  fYn+YA++ GFs rksk ++s+++g   +r fvCs  gk+e++k++ ++ +++r+etr +C a++k+ +++
  Ro07_G18572  98 FYNRYAYSFGFSSRKSKAHNSSTTGILRDRLFVCSVDGKHEKDKRN-VHVKSHRTETRFNCLARMKIILWN 167
                  *******************************************999.999****************98874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MEHESSMRSV LQNRAIATPD VEVTYNCRDG TQSNLDFESD IDLNGSNEVE DNDVEDIEEE  60
LEATKPNGNV DSIHSRVRQD LIPVIGMKFE TGDDAHAFYN RYAYSFGFSS RKSKAHNSST  120
TGILRDRLFV CSVDGKHEKD KRNVHVKSHR TETRFNCLAR MKIILWNSML IIHVQLQLLT  180
TEEAPQVISP VINSAPEVIF DDFEDHRVRG IKIKERVVRK KDSIKPKNAL EKLVANKRHK  240
KEVDIYFIDA TEGTFKCEFH TFFNETRFPF RATPVDRPKS TWRANPLTHP SSATHLPTPP  300
AATTVSSSTT QGQVAEQTRS RTQLKIGPNP KPRSLFSFLS SSTRGREERP PAATPVSSST  360
TQGQATDQTR SRTLDCKEER IAERKNSLYA RREKQWRISY ILKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.27e-09FAR1 family protein