PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G18570

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 415aa MW: 47154.6 Da PI: 6.9829

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G18570	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79	8.1e-25	222	312	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aC v r +C + C l pyfp ++++f +v+++FG ++vl llk +p+e + ++s l+ eA++r rdPv G+++vi +lq +l+ ++ Ro07_G18570 222 PCGACTVTRDRCDHLCELYPYFPRCDAENFIAVREVFGIKKVLDLLKMVPQESKASTISNLISEAKIRRRDPVGGCMAVIASLQAKLNAER 312 7*************************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MKGSVAHAPA SVFLMRSITQ REQHKRIRAK KPKKPERTVN LEFYPDKETI NSKKELSSLL 60 FRSLNNQQDF SWKELESICF NVKYFEECVT NGDWFRAEEY ISAFIEPETD DDAEEVIQIF 120 SLLQNRRDNV DTLDDKMLAL KILRQLIERV RQRVLSKLRS YDSLAGVPDI PLRSLVDALS 180 SHGCKRTSDE GHQVERHFLE PTGDKGTRQF WGKGPSLSTE RPCGACTVTR DRCDHLCELY 240 PYFPRCDAEN FIAVREVFGI KKVLDLLKMV PQESKASTIS NLISEAKIRR RDPVGGCMAV 300 IASLQAKLNA ERDRSISGHQ VERHLEPTGD KGTTQFWRAM AGEQNVMQEA YKVEEAKAAA 360 DRAMDLATRK RERAQMLLQN SELATYKAVM AVHIAEAAEA VGSTEDAADL LLDRD

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MKGSVAHAPA SVFLMRSITQ REQHKRIRAK KPKKPERTVN LEFYPDKETI NSKKELSSLL  60
FRSLNNQQDF SWKELESICF NVKYFEECVT NGDWFRAEEY ISAFIEPETD DDAEEVIQIF  120
SLLQNRRDNV DTLDDKMLAL KILRQLIERV RQRVLSKLRS YDSLAGVPDI PLRSLVDALS  180
SHGCKRTSDE GHQVERHFLE PTGDKGTRQF WGKGPSLSTE RPCGACTVTR DRCDHLCELY  240
PYFPRCDAEN FIAVREVFGI KKVLDLLKMV PQESKASTIS NLISEAKIRR RDPVGGCMAV  300
IASLQAKLNA ERDRSISGHQ VERHLEPTGD KGTTQFWRAM AGEQNVMQEA YKVEEAKAAA  360
DRAMDLATRK RERAQMLLQN SELATYKAVM AVHIAEAAEA VGSTEDAADL LLDRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-18	LBD family protein