PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G17536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 20851 Da PI: 9.6195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.6 | 1.4e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r++t+ kR++g++KK +ELS+LC+++++ i++s+ Ro07_G17536 11 ITNNSARKTTYKKRKKGMMKKLSELSTLCGIDACAIMYSP 50 89*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
MARRKVKLAY ITNNSARKTT YKKRKKGMMK KLSELSTLCG IDACAIMYSP YDSQPEVWPS 60 PSGVENVLEK FKNIPEMEKS RKMLNQEGFL REMISKETEQ LKKVRKENRE KELRGVVFKS 120 LTTGIPQLQD LNFMDMDDLG RLINQKLDEI NSKKMALSEE ETENQNQTVQ SSCTNNACIS 180 N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKVKLAYITNNSARKTTYKKRK |
2 | 17 | 32 | RKTTYKKRKKGMMKKL |
3 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-48 | M-type_MADS family protein |