PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G17520
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 310aa    MW: 34798.4 Da    PI: 4.5749
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G17520genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.5e-131257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk+ G+++W++I ++  + Rt+k+c++rw +
      Ro07_G17520 12 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 57
                     79*************************8887799**********87 PP
2Myb_DNA-binding42.51.5e-1368107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
      Ro07_G17520  68 KFSLEEERVVIELQAQFGNK-WAKIATYLP-GRTDNDVKNFW 107
                      799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEGKREEGMI RKGPWKAEED EVLLNHVKKC GPRDWSSIRS KGLLQRTGKS CRLRWVNKLR  60
PNLKNGCKFS LEEERVVIEL QAQFGNKWAK IATYLPGRTD NDVKNFWSSR QKRLARILQT  120
STAITPSKSH KNKRGVPAVY LDEVPTLEVP KFSCSSEGES SSQAASCSSP CIDAIKMVPL  180
PDLVDPELLG FEANPVQHEL TLTEKNLWIE SQPLISFLEN PQPQTDLEFS SDTQELLRDP  240
YFDMFGPLDA ELGNGEPQLA IEPSLLEPVG SCGNVEGEKI DNPIIPDCVF DDFPADMFDN  300
IEPLPNQSDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-71MYB family protein