PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G17024

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 603aa MW: 67379.8 Da PI: 4.3899

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G17024	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175	2.2e-54	9	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 l+pGfrFhPtdeelv++yLk+kv+gk++++ ++i+ vdiyk+ePwdLp k k+k+++ ewyfFs dkky +++r+nrat++gyWk+tgkd++v++ + Ro07_G17024 9 LAPGFRFHPTDEELVWYYLKRKVAGKSFRF-DAISVVDIYKIEPWDLPgKsKLKSRDMEWYFFSLLDKKYGNSSRTNRATEKGYWKTTGKDRPVCH-N 104 579************************9.99***********6348888999**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLvf++grapkg +t+Wvmheyrl Ro07_G17024 105 SREVGMKKTLVFHSGRAPKGARTNWVMHEYRL 136 99**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MGRQSAQSLA PGFRFHPTDE ELVWYYLKRK VAGKSFRFDA ISVVDIYKIE PWDLPGKSKL 60 KSRDMEWYFF SLLDKKYGNS SRTNRATEKG YWKTTGKDRP VCHNSREVGM KKTLVFHSGR 120 APKGARTNWV MHEYRLDNQE LEKAGIIEKD AYVLCRIFQK SGTGPKNGEQ YGAPFLEEEW 180 DEEDEVYGPG EEATAHEVAV SGGPYAEANE FSDGGYVEAL DLDQNLDTGV PESAPRPLNF 240 YHGETSNYVE QSGDFIEDAA MTAVGAGETL EYCEDQKYFD LPEHYEMDAK PVKVEYLTSE 300 YHDNQKFFDL PEYYETDAKA VKDEYYVEPS NNVIPVDVSY SLNDPYLNAT ENPPFGDGQF 360 LETNDLSIPA NPVESNSAGF DMLDEYLTYF DADDDISQYI DFDSCGMMGN ENIVPGQAPV 420 EQKSVTGEIE PLSTGSQHLV EAHDINDASS SKQKPDVTFG SDGKYPFITK ASQMLGSIPA 480 PPAFASEFPP KDAILRLNSE AASSSSVHAG MIRIRDITSS DNRVEWSIGK DGVVNLVFSV 540 QLPQSDVTAA NLVPMGGSVS GKTGSVVMRG WFLFMFFWVL FLSISFKIGS YICAKRNGSQ 600 HFF

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MGRQSAQSLA PGFRFHPTDE ELVWYYLKRK VAGKSFRFDA ISVVDIYKIE PWDLPGKSKL  60
KSRDMEWYFF SLLDKKYGNS SRTNRATEKG YWKTTGKDRP VCHNSREVGM KKTLVFHSGR  120
APKGARTNWV MHEYRLDNQE LEKAGIIEKD AYVLCRIFQK SGTGPKNGEQ YGAPFLEEEW  180
DEEDEVYGPG EEATAHEVAV SGGPYAEANE FSDGGYVEAL DLDQNLDTGV PESAPRPLNF  240
YHGETSNYVE QSGDFIEDAA MTAVGAGETL EYCEDQKYFD LPEHYEMDAK PVKVEYLTSE  300
YHDNQKFFDL PEYYETDAKA VKDEYYVEPS NNVIPVDVSY SLNDPYLNAT ENPPFGDGQF  360
LETNDLSIPA NPVESNSAGF DMLDEYLTYF DADDDISQYI DFDSCGMMGN ENIVPGQAPV  420
EQKSVTGEIE PLSTGSQHLV EAHDINDASS SKQKPDVTFG SDGKYPFITK ASQMLGSIPA  480
PPAFASEFPP KDAILRLNSE AASSSSVHAG MIRIRDITSS DNRVEWSIGK DGVVNLVFSV  540
QLPQSDVTAA NLVPMGGSVS GKTGSVVMRG WFLFMFFWVL FLSISFKIGS YICAKRNGSQ  600
HFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-141	NAC family protein