PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G16081
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 291aa    MW: 33010.2 Da    PI: 8.1961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G16081genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.56.7e-051802191155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  rR +++ +++  L++l+ +      +K + a++L++A  YI  Lq
  Ro07_G16081 180 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASVYIMLLQ 219
                  7999**************99.....9***************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MRNALLPTHL YNFGNTDFQM PNWDAQMNMN RKNGFCMGSN AIESDNHNRV SGDFTLLLDQ  60
SSLLTYQPAP TAGYSNGAFR YYDHGFSQQP MLLDKKIDLV TQFEEDFQAI QIARKRPIIE  120
VNDILPKNGF GDLVGDSSPS NEWNKNKRSK VTNSQQQWHN QSQEASMEIQ DSRKLQVPVR  180
RSQKLSDKIT ALQKLVSPYG KTDTASVLQE ASVYIMLLQQ QIQNLYRMLS SSYKNAASLH  240
SPESGSSREV LDLRSKGLCL VPISITKKVT MEEDVDLDLS TSRRFVIANN F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-21bHLH family protein