PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G15143

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 449aa MW: 50858.1 Da PI: 6.5937

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G15143	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.4	3.6e-21	94	177	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y +YAk vGF ++++s+ s+ +ge+++ f C+++gkr++ + + ++ ++ +++Cka+l+vk++ gkw v+++ +eHnHel+p Ro07_G15143 94 YYLKYAKFVGFGASIKNSR-SRASGEFIDVSFACTRYGKRKDGNVS-----NPLPSYKIDCKATLRVKRRMGGKWIVQDFIKEHNHELFP 177 8************9865.569999**********998777.....9**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MQFSATLRRT ERRTAEKNRD GFEFSSVEVN LWELVGCRLA GNHELNIELN SNAEECDKEW 60 DVPMDENFTD VEENEILEPC IGMEFVSHEE ARSYYLKYAK FVGFGASIKN SRSRASGEFI 120 DVSFACTRYG KRKDGNVSNP LPSYKIDCKA TLRVKRRMGG KWIVQDFIKE HNHELFPNYA 180 HYYPLFKKCQ VEVLGAGGCY SKEVNEDNTT RTFKVEDFQK KYDFMVEWDA RKNEIYCGCP 240 TKLSKEGSMS LESFETAYLG LKETLKTCAV ANQSLKSSEE PHCRRDRDEN VNCNTHQITV 300 LDPQVSKTKG APKRSRKPGT NKFNKRHCNK SKEVQMNDEV GTKQIKSSSQ QTSLQDVEKR 360 PVASTIGLPL EGLPASRTIG GFGELTPPPP PPPENGIGEY QLCDSQTSGY NPLFLDANQT 420 YDLMNMESSG KQASHSNSMC ENMGKMAEQ

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MQFSATLRRT ERRTAEKNRD GFEFSSVEVN LWELVGCRLA GNHELNIELN SNAEECDKEW  60
DVPMDENFTD VEENEILEPC IGMEFVSHEE ARSYYLKYAK FVGFGASIKN SRSRASGEFI  120
DVSFACTRYG KRKDGNVSNP LPSYKIDCKA TLRVKRRMGG KWIVQDFIKE HNHELFPNYA  180
HYYPLFKKCQ VEVLGAGGCY SKEVNEDNTT RTFKVEDFQK KYDFMVEWDA RKNEIYCGCP  240
TKLSKEGSMS LESFETAYLG LKETLKTCAV ANQSLKSSEE PHCRRDRDEN VNCNTHQITV  300
LDPQVSKTKG APKRSRKPGT NKFNKRHCNK SKEVQMNDEV GTKQIKSSSQ QTSLQDVEKR  360
PVASTIGLPL EGLPASRTIG GFGELTPPPP PPPENGIGEY QLCDSQTSGY NPLFLDANQT  420
YDLMNMESSG KQASHSNSMC ENMGKMAEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	2e-28	FAR1 family protein