PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G14013
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 317aa    MW: 34893.1 Da    PI: 7.1977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G14013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.7e-1257101147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      Ro07_G14013  57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 101
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    
MVSNNPNPPE DLYLDPNEMA LPGLGPFASV TTAATTTSSS EDLSKKIRKP YTITKSRESW  60
TEPEHDKFLE ALQLFDRDWK KIEAFIGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK  120
RKASHPYPQK ASKIALALPQ VSGSCQSSSA LLESGFIQGP DSSSMLISPI TGAVVHSWSS  180
VQTANLSHET KGPTMPSCNS AESTPKAQPV GETTDQGNRS HNHGHPNRVL PDFCQVYSFI  240
GSVFDPNTVG HLQNLKNLDP IDLETVLLLM RNLSMNLTSP EFEDYKKLLS SSKTDADTKN  300
HLDPSKSLHD DQHNNVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-110MYB_related family protein