PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G12295

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 404aa MW: 45023.5 Da PI: 6.2396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G12295	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k+F+ + H+r+H Ro07_G12295 5 HICKICNKRFKGGKAMGGHMRSH 27 68**********99999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MDRPHICKIC NKRFKGGKAM GGHMRSHLAK LPLPPKQPPP PPTTPSPPQR LSHSPEFSSS 60 TSTLHHHNSS ILRIRNINSS VMQMMMKQSP PPPLPPAPAP APAAEYHPKP FPKYREVIAP 120 SSMDSAVESD STESHPKNPT RRRSKRRRKL IVKVALAEPP PTPQEAEQQQ VSSVSDTFST 180 EDCALSLMML SRDKWKVKNE DQSVEEEDEM EQEMEEEDDV VFRARSTPRT SSRGKYKCDT 240 CKKVFQSYQA LGGHRASHKR VRHQVFEDDD DDVDGGDDSE EEEEEEEEGN GNGGNGEGYN 300 GNSAVVEHPP PRSFECPFCF KLFDSGQALG GHKKVHYYNN TSYYNNNSSS SNNNRNNFPA 360 AANSNNNNNA RASSSSANFG NNLVIDLNFP PAPEEEFEFS TVSD

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MDRPHICKIC NKRFKGGKAM GGHMRSHLAK LPLPPKQPPP PPTTPSPPQR LSHSPEFSSS  60
TSTLHHHNSS ILRIRNINSS VMQMMMKQSP PPPLPPAPAP APAAEYHPKP FPKYREVIAP  120
SSMDSAVESD STESHPKNPT RRRSKRRRKL IVKVALAEPP PTPQEAEQQQ VSSVSDTFST  180
EDCALSLMML SRDKWKVKNE DQSVEEEDEM EQEMEEEDDV VFRARSTPRT SSRGKYKCDT  240
CKKVFQSYQA LGGHRASHKR VRHQVFEDDD DDVDGGDDSE EEEEEEEEGN GNGGNGEGYN  300
GNSAVVEHPP PRSFECPFCF KLFDSGQALG GHKKVHYYNN TSYYNNNSSS SNNNRNNFPA  360
AANSNNNNNA RASSSSANFG NNLVIDLNFP PAPEEEFEFS TVSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-23	C2H2 family protein