PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G11490

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 264aa MW: 30423.8 Da PI: 10.0637

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G11490	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47	4.7e-15	173	250	16	98
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 + +p +f ++h +++ +++l++++gr W+vk+ +s ++ l++GW +F +an+++ gD++ F+l++r + f ++ v++ Ro07_G11490 173 VAVPTDFSRKHL--PQGYYDIVLKNSEGRNWNVKV--VPSSMTVKLSGGWVKFKRANRINFGDTCRFELVKRnTMF--KFNVCK 250 568999999994..336679*************..******************************9875666..777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MARRASKEPT FFKIIKSGFN TDDLRIPPMF RRHMMNELSE RATLELKGSS KCSWTVQVSE 60 IEGDIYFKNG WQEFIRELLG YERAMHFSIE IFDKTACTRD NFRDNSTVAN ATKRPRGRPR 120 KCKQHSAAGK NIPSCQSTEL KEIKEEEEEE AATLPNSKLP SFRSIIGPSG YNVAVPTDFS 180 RKHLPQGYYD IVLKNSEGRN WNVKVVPSSM TVKLSGGWVK FKRANRINFG DTCRFELVKR 240 NTMFKFNVCK QNSKMLDDEL NLIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	KRPRGRPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	2e-14	B3 family protein