PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G08947

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 577aa MW: 65371 Da PI: 8.6266

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G08947	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.4e-25	124	209	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ +g+w+v+++++eHnHel p Ro07_G08947 124 LYKAYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRPNGNWYVYSFVKEHNHELLP 209 6*************************************999877....9**********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MLPLGVWTLE VFTGLKVLRA FLKKIKDSIG NLEVFIGLGL HLGNGKTEPS FKTLSMGEGE 60 GSTSVVEPVT SSFEVGEVDG KCRVDLNFPT PIPAIVTAVM DSCSIVEEPH DAMEFESHEA 120 AYTLYKAYAK SVGFGTAKLS SRRSRASKEF IDAKFSCIRY GNKQQSDDAI NPRPSPKIGC 180 KASMHVKRRP NGNWYVYSFV KEHNHELLPA QAHFFRSHRN ADPLKNNDVR IRRRKNSGSV 240 SSLFSAYQNS WSEEQFEKRW WKLLDRFNLR DVEWIQSLYE DRTHWVPTFM RDISFAGLSP 300 TSRSTSLNSS FDKYFHGETS LPEFMERYRN YIVEWNESKS DICCLCHSFE YKGYLCRHAI 360 VVLQMSGIFT IPTKYILQRW TNTAMSRHAI GEKLDEVQSK VRRYNDLCRR AIILGEEGSL 420 SQESYDVALC AIKEALKQCT SLNTSVENNA KPNDSAIHGV CSLEEENLSG IQSDDKLFGP 480 KVSPANKTSR RARTGKAVAR NEQGKVPQLE GTRVSTQDNF HQMQVSSDSR PPMLMQLHNV 540 VPTQLHNMVP SMFQNVAPAQ FHNVASSTHV QENRLPQ

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MLPLGVWTLE VFTGLKVLRA FLKKIKDSIG NLEVFIGLGL HLGNGKTEPS FKTLSMGEGE  60
GSTSVVEPVT SSFEVGEVDG KCRVDLNFPT PIPAIVTAVM DSCSIVEEPH DAMEFESHEA  120
AYTLYKAYAK SVGFGTAKLS SRRSRASKEF IDAKFSCIRY GNKQQSDDAI NPRPSPKIGC  180
KASMHVKRRP NGNWYVYSFV KEHNHELLPA QAHFFRSHRN ADPLKNNDVR IRRRKNSGSV  240
SSLFSAYQNS WSEEQFEKRW WKLLDRFNLR DVEWIQSLYE DRTHWVPTFM RDISFAGLSP  300
TSRSTSLNSS FDKYFHGETS LPEFMERYRN YIVEWNESKS DICCLCHSFE YKGYLCRHAI  360
VVLQMSGIFT IPTKYILQRW TNTAMSRHAI GEKLDEVQSK VRRYNDLCRR AIILGEEGSL  420
SQESYDVALC AIKEALKQCT SLNTSVENNA KPNDSAIHGV CSLEEENLSG IQSDDKLFGP  480
KVSPANKTSR RARTGKAVAR NEQGKVPQLE GTRVSTQDNF HQMQVSSDSR PPMLMQLHNV  540
VPTQLHNMVP SMFQNVAPAQ FHNVASSTHV QENRLPQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	2e-62	FAR1 family protein