PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07819

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 347aa MW: 39187.1 Da PI: 7.8348

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07819	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	29	74	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+eE +++ a + + + +W +Ia +++ g+t +++ + Ro07_G07819 29 SKWTKEENKRFESALAIFDEKtpdRWVKIAGMIP-GKTVVDVIKQYK 74 58******************************.****998886 PP
2	Myb_DNA-binding	38.7	2.3e-12	131	175	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++++ ++G+g+W+ I+r + +t+ q+ s+ qky Ro07_G07819 131 PWTEDEHMRFLKGLLKYGKGDWRNISRNFVMSKTPTQVASHAQKY 175 7***************************899*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MLGLGSMETM YPASYMADTN WFVEESQSSK WTKEENKRFE SALAIFDEKT PDRWVKIAGM 60 IPGKTVVDVI KQYKELADDV SDIEAGLIEI PGYHPTSAFT LELVEDRNFD ANRKRSAAAR 120 GSDQERKKGI PWTEDEHMRF LKGLLKYGKG DWRNISRNFV MSKTPTQVAS HAQKYFMRQH 180 SGGKDKRRPS IHDITTVNLT STTTTSPSQN NNNNRPPLDQ SPPPEHNSKS IESPRVVLDW 240 NIMPDDEVGG AMIFGATHGD LFELSSPYDV GAPDDLKLRW QKLYASPTRY AAHARSPSSI 300 PRDIRYMDEA VFHGLKIQEG SSNPPPEDKP RRLVSFGGTG CRWPLLK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MLGLGSMETM YPASYMADTN WFVEESQSSK WTKEENKRFE SALAIFDEKT PDRWVKIAGM  60
IPGKTVVDVI KQYKELADDV SDIEAGLIEI PGYHPTSAFT LELVEDRNFD ANRKRSAAAR  120
GSDQERKKGI PWTEDEHMRF LKGLLKYGKG DWRNISRNFV MSKTPTQVAS HAQKYFMRQH  180
SGGKDKRRPS IHDITTVNLT STTTTSPSQN NNNNRPPLDQ SPPPEHNSKS IESPRVVLDW  240
NIMPDDEVGG AMIFGATHGD LFELSSPYDV GAPDDLKLRW QKLYASPTRY AAHARSPSSI  300
PRDIRYMDEA VFHGLKIQEG SSNPPPEDKP RRLVSFGGTG CRWPLLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	4e-83	MYB family protein