PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro07_G06905
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 279aa    MW: 31902.2 Da    PI: 9.0091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro07_G06905genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.73.7e-12651194398
                  S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
           B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                  g+ W+++l+ + + +r++l+kGW+eF++  +L++gDf +F+++g+ s f   v++++
  Ro07_G06905  65 GQPWKIQLRKSPRHERMWLEKGWEEFANFYKLDQGDFATFSYEGKhSHF--QVRIYS 119
                  799*****77777777***************************976777..888776 PP
2B351.61.7e-161892771499
                  T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   r+ +  +fa+eh +k  +s +ltl++ +  + W+++++  +++ gr   ++ ++GWk F ++n+L+egD++v++l++  e +++v++fr+
  Ro07_G06905 189 FRVFINQSFASEHFYKAGTSCDLTLQNiLGDKIWTIQCCSyKRSNGRiqaIISGAGWKAFRQDNHLEEGDVCVLELIE--ELKCRVSIFRA 277
                  478999*******99999999******5555*******6634444447879999*********************987..66777999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MASPTKRDRK GKRPAVPDDS PNFCLRILSL DDTKDGKKVE LLETVVRTYR DRVADHIFLA  60
VPKCGQPWKI QLRKSPRHER MWLEKGWEEF ANFYKLDQGD FATFSYEGKH SHFQVRIYSS  120
TDLEIDYPIR GGGSDSIRPN RKETGAVIAI SSPSGSSADE HDYDLSWVSS FRSDKPFLNI  180
RIPAKALAFR VFINQSFASE HFYKAGTSCD LTLQNILGDK IWTIQCCSYK RSNGRIQAII  240
SGAGWKAFRQ DNHLEEGDVC VLELIEELKC RVSIFRAKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-10B3 family protein