PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G06808

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 360aa MW: 39134.1 Da PI: 4.9843

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G06808	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	99	150	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI++Lq Ro07_G06808 99 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYISELQ 150 79*************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDDQLLSEFF QEHDHQYSGS DASSLVPGDD LFSILESLDA GALMDSFPPP TPSDDLVFSS 60 SKDGGMETSP ELETSPKSSK RVKLSAEASP AGNSEDGQQR MSHITVERNR RKQMNEHLTV 120 LRSLMPCFYV KRGDQASIIG GVVDYISELQ QVLQSLEAKK QRKAYSEVLS PRLPVSSSPR 180 LPSSPLVLSP RKPPLSPLAS PRISCSSLPI SPRTPQPTSP YKPARTTSLQ QPTYLSSPTM 240 AAASSSLEPS PSNSSTTNYS TSVNNVIDNL NELFANSKSA VADVEVKFSG ANVLLNTVSP 300 RIPGQALKII SALEDLSLEI LHIEIKTEDE KMLNSFTIKI GIECQLSAEE LAHQIQQTFC

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDDQLLSEFF QEHDHQYSGS DASSLVPGDD LFSILESLDA GALMDSFPPP TPSDDLVFSS  60
SKDGGMETSP ELETSPKSSK RVKLSAEASP AGNSEDGQQR MSHITVERNR RKQMNEHLTV  120
LRSLMPCFYV KRGDQASIIG GVVDYISELQ QVLQSLEAKK QRKAYSEVLS PRLPVSSSPR  180
LPSSPLVLSP RKPPLSPLAS PRISCSSLPI SPRTPQPTSP YKPARTTSLQ QPTYLSSPTM  240
AAASSSLEPS PSNSSTTNYS TSVNNVIDNL NELFANSKSA VADVEVKFSG ANVLLNTVSP  300
RIPGQALKII SALEDLSLEI LHIEIKTEDE KMLNSFTIKI GIECQLSAEE LAHQIQQTFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	111	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	1e-100	bHLH family protein