PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G04773

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 363aa MW: 40542.9 Da PI: 9.937

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G04773	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	4.9e-32	79	132	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ Ro07_G04773 79 SRLRWTPELHLCFVHAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 132 69***************************************************7 PP
2	Myb_DNA-binding	53.2	7e-17	80	131	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++ +v+av++lGg t+k++ + m+ kg++ ++ks++q+y+ Ro07_G04773 80 RLRWTPELHLCFVHAVERLGGQeraTPKLVLQLMNvKGLSIAHVKSHLQMYR 131 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MKRSSEGTSQ VSKESLSSSK SKKEYDDEDG DGDKEEEEVV QQPSSRNGVS SSSSTIEENE 60 KSKGASGGSV RQYVRSKNSR LRWTPELHLC FVHAVERLGG QERATPKLVL QLMNVKGLSI 120 AHVKSHLQMY RSKKMEDPNQ VVSEQGFFME GGDNHIYNRT QFSMLQSFNH HWPSSGLRYG 180 ADASWLSRHR HQIYSPYSTT GRATLLVNHH NTRVTGLYGS VAERIFGSNN TSTRATPAYN 240 NQSHTNHIPS TWRSRPQITS ANGEFQSINR QSWEDHSCLD KSSATRNTLK RKALDYSDGT 300 CDLDLNLSLK VPPKEEKALG FGLSLSLSPS SKSSKLGLMK KLQGSGRHDR EHGRKASTLD 360 LTL

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MKRSSEGTSQ VSKESLSSSK SKKEYDDEDG DGDKEEEEVV QQPSSRNGVS SSSSTIEENE  60
KSKGASGGSV RQYVRSKNSR LRWTPELHLC FVHAVERLGG QERATPKLVL QLMNVKGLSI  120
AHVKSHLQMY RSKKMEDPNQ VVSEQGFFME GGDNHIYNRT QFSMLQSFNH HWPSSGLRYG  180
ADASWLSRHR HQIYSPYSTT GRATLLVNHH NTRVTGLYGS VAERIFGSNN TSTRATPAYN  240
NQSHTNHIPS TWRSRPQITS ANGEFQSINR QSWEDHSCLD KSSATRNTLK RKALDYSDGT  300
CDLDLNLSLK VPPKEEKALG FGLSLSLSPS SKSSKLGLMK KLQGSGRHDR EHGRKASTLD  360
LTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	3e-51	G2-like family protein