PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro07_G04678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WRKY | ||||||||
Protein Properties | Length: 349aa MW: 39329.4 Da PI: 6.2319 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.2 | 3.4e-23 | 146 | 206 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg +WrKYGqKe+ ++++pr+Y+rCt + gC+++k+v++ ++ pk+ itY g+H+++ Ro07_G04678 146 DDGQAWRKYGQKEILNAPYPRAYFRCTRKydqGCQATKQVQQFQDTPKLYRITYIGKHTCR 206 8**************************998899**************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence |
MATTWLEALP TGHKRVIIKE LVHGRKRATE LQTLLNNRGD GSSPLSPEEL VKEILTSFTD 60 SLSVLTDHSK SCGDDDHQYS GTGCGEVYPY GEVKAEPSHV DHSHCDDRSY EDSGESRKRP 120 GCKDRRGCYK RRKNSESWIV VSPTIDDGQA WRKYGQKEIL NAPYPRAYFR CTRKYDQGCQ 180 ATKQVQQFQD TPKLYRITYI GKHTCRNIVK GPQMIMGTSG ESHGPQATTV SSESGSTPIY 240 NHGDHGGRLS SSMIPSTLVK KEEYKEGNTS SDLTDNHNDT SDVWPDFKDH HRHDFGFTET 300 TTALSNEDVV SNMQYLDMDL VKSIDFESDF PFDEVAFPLG PFEWARIAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 133 | RKRPGCKDRRGCYKRRK |
2 | 130 | 157 | KRRKNSESWIVVSPTIDDGQAWRKYGQK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 5e-47 | WRKY family protein |