PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28772

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 373aa MW: 41807.8 Da PI: 6.1118

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28772	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.4e-14	123	199	2	81
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 Y +Y+ + GF+vrk+k ++ +ng ++k ++Csk+gkr+ +++ + + + + tr+gCka+++ +++++gk+++++ Ro06_G28772 123 AYANYGGKKGFNVRKQKRDRN-KNGLVVKLFYCCSKQGKRKIDRNC--EPSYSLPITRVGCKAHMNCRLQNNGKFKIQQY 199 599***********99998.8888***********99887..89999**********************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
VSKNTNCTML RSESFINYGI VSQKEDEASL QGEDEVISLQ GEDEVISLQG EDEVISLQGE 60 DEVDLSSEDG VYLPGQDEGY MQSKEDFLSE SNDCSLKSNE KKDKTEELCI GMEFSSDESA 120 YKAYANYGGK KGFNVRKQKR DRNKNGLVVK LFYCCSKQGK RKIDRNCEPS YSLPITRVGC 180 KAHMNCRLQN NGKFKIQQYT SIGDYVANKV SKSDMKYEYK VSYPEHEELT KYAHEHSIEL 240 LKNLEEKKKK LLKDNTCGKE NTSEGHDDVL GEMPKACGVK RKATVGRPRG SGGYGRFKGV 300 LEGKKNIARA ESYASTSPVR KAQAKRQISF QKIEDEVPTL PPSAQVDSST QLSACDPDMP 360 FQDKLSFTQL LDA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

VSKNTNCTML RSESFINYGI VSQKEDEASL QGEDEVISLQ GEDEVISLQG EDEVISLQGE  60
DEVDLSSEDG VYLPGQDEGY MQSKEDFLSE SNDCSLKSNE KKDKTEELCI GMEFSSDESA  120
YKAYANYGGK KGFNVRKQKR DRNKNGLVVK LFYCCSKQGK RKIDRNCEPS YSLPITRVGC  180
KAHMNCRLQN NGKFKIQQYT SIGDYVANKV SKSDMKYEYK VSYPEHEELT KYAHEHSIEL  240
LKNLEEKKKK LLKDNTCGKE NTSEGHDDVL GEMPKACGVK RKATVGRPRG SGGYGRFKGV  300
LEGKKNIARA ESYASTSPVR KAQAKRQISF QKIEDEVPTL PPSAQVDSST QLSACDPDMP  360
FQDKLSFTQL LDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-08	FAR1 family protein