PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28568

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

CO-like

Protein Properties

Length: 454aa MW: 49379.4 Da PI: 6.6455

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28568	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.9	6.3e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Ro06_G28568 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP
2	zf-B_box	24.4	6e-08	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C++ ++ lC++C +H g H++++ Ro06_G28568 46 LLCERCNSQPALVRCTEERVSLCQNCDWMGH-GastsaasHKRQT 89 57*****************************.5588888888765 PP
3	CCT	38	5.8e-14	358	390	1	33
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesR 33 R +a++RYkeK+k RkFeK++rY+sRKa+A++R Ro06_G28568 358 RSNAVMRYKEKKKARKFEKRVRYASRKARADRR 390 899*****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC 60 TEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL DLPSTGSGES 120 ACEQEMGLMS IAENSTGSTW SPQENNSRQN ASDTFEVNDV GAMEKSDGLV GSSSVPALNS 180 APQVVGQMAG SANSTLPKLY CHGTKSPGLC EDDDLYDDFD MDEMDLNLEN YDELFGVSLN 240 HSEELFKNGG IDSLFGAKNM SRAQDVVAAE GSSIGRVNAL QQPACSTAAS VDSVMSTKTE 300 PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN 360 AVMRYKEKKK ARKFEKRVRY ASRKARADRR VDAKKPGSDA SPIKWRSRFL ILHHHRRIHI 420 GLPAIVMLRV DNLNDLYKVA AKLVVRWSVE KPAI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCQN CDWMGHGAST SAASHKRQTL NCYSGCPSAS ELSSIWSFVL DLPSTGSGES  120
ACEQEMGLMS IAENSTGSTW SPQENNSRQN ASDTFEVNDV GAMEKSDGLV GSSSVPALNS  180
APQVVGQMAG SANSTLPKLY CHGTKSPGLC EDDDLYDDFD MDEMDLNLEN YDELFGVSLN  240
HSEELFKNGG IDSLFGAKNM SRAQDVVAAE GSSIGRVNAL QQPACSTAAS VDSVMSTKTE  300
PIVSFVPKQA QSNLSFSGVT GESSAGDCQD CGASSMLLMG EPPWCPPGPE SSFQSANRSN  360
AVMRYKEKKK ARKFEKRVRY ASRKARADRR VDAKKPGSDA SPIKWRSRFL ILHHHRRIHI  420
GLPAIVMLRV DNLNDLYKVA AKLVVRWSVE KPAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-112	CO-like family protein