PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28517
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 721aa    MW: 81243.7 Da    PI: 9.217
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28517genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.35.6e-132742199
                 HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 kf+ ++g++   s  + l+ +sg +Wev l  ++++gr++++kGW eF +   L+ g f++F+++g+s+f  +v +f++
  Ro06_G28517  2 KFVMKYGND--LSNSVCLKLPSGSEWEVGL--TRCKGRVWFEKGWPEFSRFCSLDYGNFLLFRYEGNSNF--HVCIFDT 74
                 688888877..7789***************..**********************************9999..****997 PP
2B361.21.7e-19211303299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  l+psd  +s  l+lp +fa +h + ++ s  +tl+ ++g++W+v+++y+k++    +++ W  Fvk+n+Lk+gD++vF l+++s+  l+v +fr+
  Ro06_G28517 211 IISLKPSDIQSS--LSLPLEFAMRHLITQPAS-NITLRVSHGKTWSVEFTYSKQK--ARFQRDWLTFVKDNNLKVGDVCVFVLIKDSKLILRVVFFRT 303
                  556666666665..9**********4444444.7***************665555..559*************************9999999999987 PP
3B359.84.8e-19369459396
                  EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  +v +++ + +++ l lp +f +++  +++ ++    +l+ ++gr+W+vk++y+   +r  l++GW++Fv++n Lk+gD++vF+l+  +++el++ v
  Ro06_G28517 369 TVAMQHTYISQDTLGLPSEFGKRYlmKLP-AG--IAILRVPDGRTWSVKFKYDHVYSRAQLRSGWSSFVRDNSLKVGDVCVFTLN--NCTELLFEV 459
                  556788899999************75444.33..588999************88888999***********************85..577777665 PP
4Myb_DNA-binding22.92e-076386632148
                      TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  21 ggtWktIartmgkgRtlkqcksrwqkyl 48 
                      + +W++Ia +++ gRt+ ++k++w+++l
      Ro06_G28517 638 S-RWSLIAGRLP-GRTDMEIKNYWNTHL 663
                      3.5*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    
MKFVMKYGND LSNSVCLKLP SGSEWEVGLT RCKGRVWFEK GWPEFSRFCS LDYGNFLLFR  60
YEGNSNFHVC IFDTSATEID YPIKMPNIEE ADEVDDLSIE ILEDFQPSPK ARKKSPLPCP  120
PCKKMRTSSS GKADMVSESE KNFQPCDMFG KPITNEDSHC AKLEVKKKDG RVTGGSSGTQ  180
RFLKQTSHQV LGNTLALHRA YDLKTENPSF IISLKPSDIQ SSLSLPLEFA MRHLITQPAS  240
NITLRVSHGK TWSVEFTYSK QKARFQRDWL TFVKDNNLKV GDVCVFVLIK DSKLILRVVF  300
FRTSEATNWF SSHGEDDLFA KQVGGGSSST QTIQKRTPDV IGRMHSLTRE KALALQRANA  360
FKSDNPSFTV AMQHTYISQD TLGLPSEFGK RYLMKLPAGI AILRVPDGRT WSVKFKYDHV  420
YSRAQLRSGW SSFVRDNSLK VGDVCVFTLN NCTELLFEVV FFPTKESANC PSPTGHDRGA  480
IVQAEKQRSP VIKAEPECSM NCETGASCSP EIGKNKMSNF SGQVTPRPSS SLRASRVNLE  540
AANKFSSDNP FFKVTVGSGH SVNKQTVMLQ VKDRLSPVNL VPQKKCSISI CGGWVAFAKE  600
NCLREGDVCI FELMEMNNIV LKVHGKVIDV PIKRRMTSRW SLIAGRLPGR TDMEIKNYWN  660
THLSKKIDKQ SSNGANSTRR IYTEDKKPSL ADDDHKVHVE MKQVYYSPIE ERGDDQSWGY  720
H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-31B3 family protein