PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28516
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 638aa    MW: 72230 Da    PI: 9.8966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28516genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-16161071100
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffk+      ++++ l +pkkf+ ++g++   s  + l+ +sg +Wev l  +++ g+++++kGW eF     L+ g f++F+++g+s f  +v +f+
  Ro06_G28516  16 FFKII--LEDTSRHKLKIPKKFVIKYGKD--LSNSVCLKLPSGSEWEVGL--TRCEGKIWFEKGWPEFSLFCSLDYGNFLLFRYEGNSHF--HVCIFD 105
                  56666..66777888***********977..8889***************..**********************************9999..*****9 PP

                  SS CS
           B3  99 ks 100
                  ks
  Ro06_G28516 106 KS 107
                  85 PP
2B369.16e-22231323299
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  ltpsd  +s  l+lp +fa+++ +k++ s ++tl+ ++gr+W+v ++y+k+++r  +++GW  Fvk+n+Lk+gD++v+ l+++s+ +l+v +fr+
  Ro06_G28516 231 IISLTPSDIQNS--LSLPSDFAKSYLIKQPAS-DITLRVSNGRTWSVGFTYSKRKSR--FQRGWLTFVKDNNLKVGDVCVLVLIKDSKLTLRVVFFRT 323
                  556767666655..9**********5555555.8***************88888877..8***********************************997 PP
3B342.11.5e-13390461579
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                   +++ + +++ l+l  +fa+++ +   +  +++l+  +gr+W+++l y+ k +++++++GW  Fvk+n L++gD 
  Ro06_G28516 390 AMQPTYISQDTLYLQLDFAKKYLKR--NFGDVILRVMDGRTWSMNL-YNYKNSKFLFRTGWLAFVKDNTLEVGDL 461
                  45788889999***********533..33389999999********.6666667********************5 PP
4B351.51.8e-164775481791
                  E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   lp +f +++  +++ ++    +l+ ++gr+W+vk++y+   +r  l++GW++Fv++n Lk+gD++vF l++  ++ 
  Ro06_G28516 477 GLPSEFGKRYlmKLP-AG--IAILQVPDGRTWSVKFKYDHAYSRPQLGSGWSSFVRDNSLKVGDVCVFILNN--CTD 548
                  699999999975444.33..578899************99999*************************9753..443 PP
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    
MASLRPPRFC ATTPQFFKII LEDTSRHKLK IPKKFVIKYG KDLSNSVCLK LPSGSEWEVG  60
LTRCEGKIWF EKGWPEFSLF CSLDYGNFLL FRYEGNSHFH VCIFDKSATE IDYPIEMPTI  120
EEADDLCIEI LEDFQPNPKT RKKCPLPCPP CKKMRTSLIG KADMVSESDN SQPRDMFEKP  180
ITKELKKKDG RVTGGSSGTR RFLKQTSHQV LGNALALHRA YDFKTKNPSF IISLTPSDIQ  240
NSLSLPSDFA KSYLIKQPAS DITLRVSNGR TWSVGFTYSK RKSRFQRGWL TFVKDNNLKV  300
GDVCVLVLIK DSKLTLRVVF FRTSEATYWF SSHGEDDLFS KQVGGGSSST QTIQKQTPDV  360
IGRILLTREK ALALQRAIAF KSDNPSFIVA MQPTYISQDT LYLQLDFAKK YLKRNFGDVI  420
LRVMDGRTWS MNLYNYKNSK FLFRTGWLAF VKDNTLEVGD LSFSASLNPK ITPCHQGLPS  480
EFGKRYLMKL PAGIAILQVP DGRTWSVKFK YDHAYSRPQL GSGWSSFVRD NSLKVGDVCV  540
FILNNCTDLL FEVVFFPTKE SANCPPSTGK NKMSNFSGQV TSRPSSSLRA SRVNLEAANK  600
FSSDNPFFKV TVGSGHSVVV MNRGYFLAGN RNMDWQEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.14e-24B3 family protein