PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28456
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 448aa    MW: 50633 Da    PI: 5.9603
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28456genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1091174290
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  + +lt+s+v  + +l +p k    +  +    +s   ++ +   +sWe+++  ++ +++  + ++ W  Fv++n+Lk+gD +vF+l++ +++
  Ro06_G28456  91 DIILTKSHVKPLYQLGIPPKLD-PIlpS----GS-IPMVLTFGDKSWEMTY--NGEKRHkLLDRQSWGAFVDENNLKAGDGLVFELKECNRT 174
                  5567777777777777777753.34231....22.234455677*******..888888355569********************9742333 PP
2B3361.3e-112673273795
                  EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEE CS
           B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvk 95 
                  t+ +  g+sWe+++  ++k+ + + ++ Wk Fv++n+Lk+gD +vF+++  + ++  l+v+
  Ro06_G28456 267 TILTFAGKSWEMTCDGSNKRHKGLDKESWKAFVDDNNLKAGDGCVFEVMeCSsKKLVLRVQ 327
                  556779********6555555577889********************77343344444555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    
MKPSFYGVPR VPDHLHEHYP LDFSTLQMAP QLFKDNVGIV QSLKGRSFVG EVPVGELEDR  60
EMENSTQSSS YPSIELNGEE FWPLSGKPYF DIILTKSHVK PLYQLGIPPK LDPILPSGSI  120
PMVLTFGDKS WEMTYNGEKR HKLLDRQSWG AFVDENNLKA GDGLVFELKE CNRTQIIFRV  180
QILRGDIPDE LLEMAALPVG EAEDPEMADS AQSSSDTTIQ LHGEEFWPLS GKPFFDIILA  240
KSHVKPIYRL GIPAKLHPIL PSCSIPTILT FAGKSWEMTC DGSNKRHKGL DKESWKAFVD  300
DNNLKAGDGC VFEVMECSSK KLVLRVQILR GDIPAELLEK ENGDDAEKPI RLVCSQLKAY  360
IKETEPQQRR RRLFFWNRGE NNTEQSTTIS HMTLQDDKVA LKDNISSHVL HKLTRVRELQ  420
KTGIAIAAVI SLLLLLSWTD QFTSYTLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-09B3 family protein