PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G28421
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 329aa    MW: 37423.6 Da    PI: 7.7451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G28421genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.21e-2169152390
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  Y eY+k+vGF+vr++ ++++k++g i + +++Cs++g+r+ ++ +    + + ++tr+gCka+++ +++k+gk+++ +++  HnHel 
  Ro06_G28421  69 YIEYGKKVGFDVRIQLKNRNKKEGPIARVQYCCSRQGFRRATEGA----SYSFPVTRVGCKAQMTCQLKKNGKFMIVSFDAYHNHELI 152
                  99**************************************98777....9999*********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MEDIDCTESS DKLLGAKELN SQGEDDCDSP ITQLQINKYF FRSTGDIEMS EELKLGMEFD  60
SHESAYQSYI EYGKKVGFDV RIQLKNRNKK EGPIARVQYC CSRQGFRRAT EGASYSFPVT  120
RVGCKAQMTC QLKKNGKFMI VSFDAYHNHE LIRTSMKHML KINRCISKAQ EFHGDDAEKS  180
GISIKQILEL MSREVGGREN LAEDEKLTTY AHERSIALLD ELEEMKKNIF KSMTYVDESL  240
ESEDSLSESE HQEIPIVRGV KRKATVGRPR GGRMKNVAEK FKRTSQKKAP ASRCLLMKDS  300
SPVRANSKLQ LAIAEEIPTA TQTDELMKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-19FAR1 family protein