PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G28017

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 364aa MW: 39917.6 Da PI: 6.6205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G28017	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+ Ed +l+ +v ++G g+W+ ++++ g++R++k+c++rw +yl Ro06_G28017 14 RGLWTAAEDAKLLAYVSKHGVGNWTVVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	49.3	1.2e-15	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eE++ +++++k G++ W++Ia+ ++ gRt++++k++w++ Ro06_G28017 69 TFTPEEEQHIINLHKAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MGRPPCCDKS NVKRGLWTAA EDAKLLAYVS KHGVGNWTVV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHDTF TPEEEQHIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLRKMG 120 IDHVTHKPIS QILCDYGNIT SLSNNTGNHF EPSFNNNNST TFVPESDPSS CITGLAFTNM 180 MVMNPMMESQ DHSSTSTLPF GFLSQFQAMS QDNVSLQPHF LNEVTSSCSS SSSPPATDLL 240 SSQCHATAQV VTSSSSPFNW SEFLLHEPFS SADQLNKHQE EVLHGLVPSP ANPALGNGIQ 300 SQPQGFEVGS SSSSAINGGQ SLNNNLPDDH IASSLSSFVD TILGQDSEMR AALFPELLDG 360 SFDY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MGRPPCCDKS NVKRGLWTAA EDAKLLAYVS KHGVGNWTVV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHDTF TPEEEQHIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLRKMG  120
IDHVTHKPIS QILCDYGNIT SLSNNTGNHF EPSFNNNNST TFVPESDPSS CITGLAFTNM  180
MVMNPMMESQ DHSSTSTLPF GFLSQFQAMS QDNVSLQPHF LNEVTSSCSS SSSPPATDLL  240
SSQCHATAQV VTSSSSPFNW SEFLLHEPFS SADQLNKHQE EVLHGLVPSP ANPALGNGIQ  300
SQPQGFEVGS SSSSAINGGQ SLNNNLPDDH IASSLSSFVD TILGQDSEMR AALFPELLDG  360
SFDY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	KLKKKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	3e-79	MYB family protein