PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G26241

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 436aa MW: 48320.3 Da PI: 6.6772

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G26241	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.6e-08	340	380	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Ro06_G26241 340 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 380 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MDGFGWDGSH IITNTSTLWS NHHQHDLDQE SLLMSNNSSS GLFNIPIQDQ LQKIQTSHVM 60 MNSNPQSRSS NTEMARQNWA GQSLAAEDHL CQAPLVINRP FSMNSMVSSS FMADDYHHVE 120 ARPAATATCS IESLDCLLSA TNSNTAEETT SLNQDDAINS TIFSDCRKSN VWNFGTGSTT 180 TAVSSGESET TNNASRSNKE TRSSNKRSRD NDQGDQLKFY AENYSHHFDL LQTDSSTTTT 240 EGGGFRLISE NPSRAKKLKS SSDQKSTPPS STNINFQQPT SSSLSGSSTD QEPDPEVIAQ 300 MKEMIYRAAA FRPVNLGLEI IERPKRKNVK ISSDPQTVAA RQRRERISER IRVLQKLVPG 360 GSKMDTASML DEAANYLKFL RSQVKALENL GQKIDSMSNC LPPTSFAFSF NPSFPMQTHH 420 VPLHLNPNHN IHQPQN

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MDGFGWDGSH IITNTSTLWS NHHQHDLDQE SLLMSNNSSS GLFNIPIQDQ LQKIQTSHVM  60
MNSNPQSRSS NTEMARQNWA GQSLAAEDHL CQAPLVINRP FSMNSMVSSS FMADDYHHVE  120
ARPAATATCS IESLDCLLSA TNSNTAEETT SLNQDDAINS TIFSDCRKSN VWNFGTGSTT  180
TAVSSGESET TNNASRSNKE TRSSNKRSRD NDQGDQLKFY AENYSHHFDL LQTDSSTTTT  240
EGGGFRLISE NPSRAKKLKS SSDQKSTPPS STNINFQQPT SSSLSGSSTD QEPDPEVIAQ  300
MKEMIYRAAA FRPVNLGLEI IERPKRKNVK ISSDPQTVAA RQRRERISER IRVLQKLVPG  360
GSKMDTASML DEAANYLKFL RSQVKALENL GQKIDSMSNC LPPTSFAFSF NPSFPMQTHH  420
VPLHLNPNHN IHQPQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	346	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	6e-59	bHLH family protein