PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G25735
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 324aa    MW: 35853.7 Da    PI: 7.7112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G25735genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.6e-13252297655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Ro06_G25735 252 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 297
                  689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MDSNTHLDLE HQNHQPNSGL LRFRSAPTSL LANFVDNNGE LGVNKGNSIE GSDHSDRFFS  60
RFVNYSHTND SESWPSSLQE FEDKSTVMAT EAAVTASRMS SQQQGFPGLP PHYPRQSSFG  120
SGNGSYGLVG SAAVDHHPQA KTVSSNLVRQ SSSPAGLFSN SSVQNGFPFG AWNDPSNFSE  180
NLAGMRRDQD NDGELFSAAQ NGDLGNRIHV LSHHLSLPKN SAEVAMEKFL QFQDSVPCKV  240
RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV DYIKELQKQF  300
KSLSDVRANC KCLSMQKPVQ NQIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-109bHLH family protein