PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G24251

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 385aa MW: 43635.5 Da PI: 7.8745

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G24251	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++ ++G+g +W + +++ g++R++k+c++rw++yl Ro06_G24251 14 KGPWSPEEDSKLKEYIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.4	6.8e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Ro06_G24251 69 GEFSEEEDRIICTLFTSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDRIIC TLFTSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLREM 120 QSHMAPPPLT NHRSKPPPFP VNSSLHQFQN QPFHEISHHH HHHHHQPLSL MHKDLNMMTY 180 STYNPNLTNP TTTTTATGSF SSGFEIMPNI STSLTNYSSL FPTQECLVGS MHYNHNHPAV 240 KKNLNLIMFG SEGSCSTSSD GSCNNNQISY ESRPSGNIIK QEEMGMGFQV EDQNQKFMML 300 NYGNSNGAIS GDHHSYVNNN NQWGERPNGY NGNTYFGDYD LEDVKQLISS SSNNISNNDN 360 GSISNSLFSV DENKTDHKEK VVYFY

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKEYID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC TLFTSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLREM  120
QSHMAPPPLT NHRSKPPPFP VNSSLHQFQN QPFHEISHHH HHHHHQPLSL MHKDLNMMTY  180
STYNPNLTNP TTTTTATGSF SSGFEIMPNI STSLTNYSSL FPTQECLVGS MHYNHNHPAV  240
KKNLNLIMFG SEGSCSTSSD GSCNNNQISY ESRPSGNIIK QEEMGMGFQV EDQNQKFMML  300
NYGNSNGAIS GDHHSYVNNN NQWGERPNGY NGNTYFGDYD LEDVKQLISS SSNNISNNDN  360
GSISNSLFSV DENKTDHKEK VVYFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	KLKKKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	7e-79	MYB family protein