PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G23873
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31868.7 Da    PI: 6.3919
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G23873genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.89.3e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  Ro06_G23873  9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                 59***********************************************96 PP
2K-box56.98.9e-2071170199
        K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  yq +sg++  ++++a+ l+ e++k+k+e+e+L  ++ ++ GedL+   +++L++Le+qLe+sl+++R++K e+l +++++l+   k+ +e+n++L + 
  Ro06_G23873  71 YQYASGTRiRQDSDAQILNAEMRKIKQETEELHLSLQRYTGEDLSCVRFEDLEELENQLEESLNRVRARKLEILQQEVNNLRISTKQREEQNNELCHL 168
                  5667778888999*********************************************************************************9887 PP

        K-box  98 le 99 
                  ++
  Ro06_G23873 169 IK 170
                  76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMEEIIRR YQYASGTRIR QDSDAQILNA EMRKIKQETE ELHLSLQRYT GEDLSCVRFE  120
DLEELENQLE ESLNRVRARK LEILQQEVNN LRISTKQREE QNNELCHLIK EHQAAVLFAH  180
QHHYQQHVEM EPKSEEHRHL VEQFPFCGEE QPLLQLATTS MQPQFAAYQA STSSLQPNQP  240
HLHDFSLNIY VIDRDESGFS LLGHANSWDY GSAN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-44MIKC_MADS family protein