PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G22214

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GeBP

Protein Properties

Length: 424aa MW: 47062.6 Da PI: 4.5104

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G22214	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	120	1.2e-37	186	279	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 rlws +Dei++L+G+id+kak+g++p+ ++ f+ef+kks++++vsk+ql++KirrL+kK++++ +k ++g++p+fsk+h+ k+f+lskkiWg Ro06_G22214 186 GRLWSGDDEIAILKGMIDYKAKKGSDPYTNMGPFHEFLKKSLKVDVSKNQLMDKIRRLRKKYHTNAEKGENGEDPVFSKAHELKSFDLSKKIWG 279 69*******************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MAPKRLLEDP PAASSMEEDS DAETVDEEEE EEQDDVVEAE NGKEKSGDEE DEEEEEEEEE 60 DDDEEDNVNG KEKEKSPAKK PLVTSSSAVP NPQSQSASSE EDEDDAGSET ESDDINHSPS 120 ASDFTVKPIV SKPMNDSVKP NKKNAPAKPG SVNPGSKRPA ESDLTLRDSK KKKGTNSGDD 180 EDTKKGRLWS GDDEIAILKG MIDYKAKKGS DPYTNMGPFH EFLKKSLKVD VSKNQLMDKI 240 RRLRKKYHTN AEKGENGEDP VFSKAHELKS FDLSKKIWGV EADGDDDNAK NSKKKPPRKS 300 SKANNSSTVL ALPVSDVADK NVDKKEGLNV ANGGVEAEPD GFWSKYPCLS ASLRFGNCSP 360 RSEDLERLMI QRMPSIGSSK AKELDDRWRK LQVLEMELSV KKLDVMHEQA KLMNFWQSSN 420 YTNS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MAPKRLLEDP PAASSMEEDS DAETVDEEEE EEQDDVVEAE NGKEKSGDEE DEEEEEEEEE  60
DDDEEDNVNG KEKEKSPAKK PLVTSSSAVP NPQSQSASSE EDEDDAGSET ESDDINHSPS  120
ASDFTVKPIV SKPMNDSVKP NKKNAPAKPG SVNPGSKRPA ESDLTLRDSK KKKGTNSGDD  180
EDTKKGRLWS GDDEIAILKG MIDYKAKKGS DPYTNMGPFH EFLKKSLKVD VSKNQLMDKI  240
RRLRKKYHTN AEKGENGEDP VFSKAHELKS FDLSKKIWGV EADGDDDNAK NSKKKPPRKS  300
SKANNSSTVL ALPVSDVADK NVDKKEGLNV ANGGVEAEPD GFWSKYPCLS ASLRFGNCSP  360
RSEDLERLMI QRMPSIGSSK AKELDDRWRK LQVLEMELSV KKLDVMHEQA KLMNFWQSSN  420
YTNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	1e-29	GeBP family protein