PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G21270

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 440aa MW: 49809.3 Da PI: 4.8037

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G21270	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.5	6.9e-36	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++++swse+g sfvv+d++efak++Lp yFkh+nf+SFvRQLn+YgF+kv+ e+ weF++++F +g ++ll++i+ Ro06_G21270 14 FLSKTYDLVDDPSTNHVVSWSETGCSFVVWDPTEFAKDLLPMYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFLRGGRHLLKNIH 101 9*************************************************************9998.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Ro06_G21270 102 RRK 104 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MDGSQGGSNA PAPFLSKTYD LVDDPSTNHV VSWSETGCSF VVWDPTEFAK DLLPMYFKHN 60 NFSSFVRQLN TYGFRKVDPE QWEFANEEFL RGGRHLLKNI HRRKPIHSHS MQNHEYSSSV 120 PLSETEREEY EKKINRLNHD KSVLESELQR HQRENQEFEF QMQLLSEQLQ KMELRQRQYT 180 TFLAQILQKP GFASLLMQQS EKHNKKRRLL KPNLFPDDFG MEGLNLNSQK QNLDSISTSA 240 SKSDQLEKME SSLNFWEDFI RGIGEAIPEE VNDIGPVSEA SPIIITEIQD IGMNSRPCSP 300 ISNLSSPTSM NVHSSPEVAA SANLFDILAI SSMCQTVDIR PKSSGIDMNS KPDSAPAVEA 360 PKERVVEMTT AEPTAANDVF WEQCLTETPG LNDAQEVQSE RRDSDGGASD TNAAAQKTRW 420 WNTDNLDNFT NQIGRLTPAT

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MDGSQGGSNA PAPFLSKTYD LVDDPSTNHV VSWSETGCSF VVWDPTEFAK DLLPMYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEEFL RGGRHLLKNI HRRKPIHSHS MQNHEYSSSV  120
PLSETEREEY EKKINRLNHD KSVLESELQR HQRENQEFEF QMQLLSEQLQ KMELRQRQYT  180
TFLAQILQKP GFASLLMQQS EKHNKKRRLL KPNLFPDDFG MEGLNLNSQK QNLDSISTSA  240
SKSDQLEKME SSLNFWEDFI RGIGEAIPEE VNDIGPVSEA SPIIITEIQD IGMNSRPCSP  300
ISNLSSPTSM NVHSSPEVAA SANLFDILAI SSMCQTVDIR PKSSGIDMNS KPDSAPAVEA  360
PKERVVEMTT AEPTAANDVF WEQCLTETPG LNDAQEVQSE RRDSDGGASD TNAAAQKTRW  420
WNTDNLDNFT NQIGRLTPAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	3e-95	HSF family protein