PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G21222

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 318aa MW: 34788.6 Da PI: 7.7006

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G21222	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	113	135	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Ro06_G21222 113 YECKTCNRTFPSFQALGGHRASH 135 99**********99999998887 PP
2	zf-C2H2	13.2	0.00028	201	223	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Ro06_G21222 201 HECSICGSEFTSGQALGGHMRRH 223 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MEGQEELVVS SDYHQTQMII KGKRTKRQRP MSPFGLAGTS SSSSACGGTQ GGGEEYGNSF 60 TSASYESTEE EEDMANCLIL LAQGCDVVPK QTSSTVEASA ISTHVGRAGF YVYECKTCNR 120 TFPSFQALGG HRASHKKPKS AAAVADQDKK SAPTHFISAS MDQEQEDSKQ FVKKSSPPPS 180 AHTVPIQMKG FQSNNNKAKI HECSICGSEF TSGQALGGHM RRHRAAVASN ITTTTSAQVV 240 GMSAAIDNST KRSKQERNIL ALDLNLPAPE DHDYHHHHHH QQHQIHQLHH QRDSKFQFVP 300 TQQTNLVFNA PALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-53	C2H2 family protein