PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20451

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 524aa MW: 59408.3 Da PI: 7.4248

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20451	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.6e-10	440	508	17	89
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 v+p +a++++ +++++ + ++ d +g++W+v+ +++++ l++GW + +an++++gD + F+l + Ro06_G20451 440 VIPMYYARANM-PTKKNYQCKIIDAQGKVWTVNA--FTNGETMSLSGGWVKCKEANNIRVGDRCKFTLLA-PG 508 89***9995.44577899**********..88888899*********************865.33 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MYCMNSGVYA FPDADINASL FIFSYTHLIS NYLQISAINQ QKPRINEGEF ATMSGSRSHE 60 GSQRLESPTR RDKGKIPTLE EPPQHSPAPP SFHRHYGTEN LGSRFDEAAK KLFARVEESS 120 RRSGASISRL IKTEVIVISD DEEDKLVHED LPYFYKTARG NGERDQDRVH YVFQCRLGHR 180 VDLCLLIPLA VNEKLDFDSY VYTLGDTPCC RSVLVPLRQN MHGQFGQLVP DLPVSLMLLD 240 KLCPLEFTYS LQISSIGISE QSLHLNHINE GKRIERRDHT RSWLEVTVMA KRKTTDVVNE 300 YSQRGGSPIK QPRTEGSGNS LIDQFVPPLN YDKCGSVGSE LMDFHTKARQ VLSQVPKHLF 360 VIATDHVCTQ THQSSAAQKA PEIIYGSDSI VHAAHDLPTN LTTEPGSQGD IRKHREKANT 420 IWWSDELDDR YGRQSFEKEV IPMYYARANM PTKKNYQCKI IDAQGKVWTV NAFTNGETMS 480 LSGGWVKCKE ANNIRVGDRC KFTLLAPGEM PVIFWLRLCP RLID

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MYCMNSGVYA FPDADINASL FIFSYTHLIS NYLQISAINQ QKPRINEGEF ATMSGSRSHE  60
GSQRLESPTR RDKGKIPTLE EPPQHSPAPP SFHRHYGTEN LGSRFDEAAK KLFARVEESS  120
RRSGASISRL IKTEVIVISD DEEDKLVHED LPYFYKTARG NGERDQDRVH YVFQCRLGHR  180
VDLCLLIPLA VNEKLDFDSY VYTLGDTPCC RSVLVPLRQN MHGQFGQLVP DLPVSLMLLD  240
KLCPLEFTYS LQISSIGISE QSLHLNHINE GKRIERRDHT RSWLEVTVMA KRKTTDVVNE  300
YSQRGGSPIK QPRTEGSGNS LIDQFVPPLN YDKCGSVGSE LMDFHTKARQ VLSQVPKHLF  360
VIATDHVCTQ THQSSAAQKA PEIIYGSDSI VHAAHDLPTN LTTEPGSQGD IRKHREKANT  420
IWWSDELDDR YGRQSFEKEV IPMYYARANM PTKKNYQCKI IDAQGKVWTV NAFTNGETMS  480
LSGGWVKCKE ANNIRVGDRC KFTLLAPGEM PVIFWLRLCP RLID