PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20253

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 1055aa MW: 119165 Da PI: 4.6398

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20253	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.1e-08	996	1050	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 + +WT+eE+e l+++v+++ Wk I + gRt+ ++k +w++ Ro06_G20253 996 KVPWTEEEEEMLKKGVQEFSCTdetrlPWKQILEFGYdvflSGRTPTDLKYKWRN 1050 579***************99******9864488889**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1055 aa Download sequence
MEGMSEHQRA IAWLWVVEGL ATMKQVDVSL LTGTSMLGLF MAFFLAFSDL LGEIGSSLPD 60 QMAKNAKERV ALRCLEEICN GIPSTQNSKV GFDLSQSCES VLKRITDETP ESDFRNAGPG 120 LLKWDIHPFI LHKKAAMPKS ALKQLKDSIL DGTHPHADLL REKSGLTFRS DGDRVSANES 180 NQSLNKSCSS AQNMGVEGNS DCLILENVSK LLEEDKNDEN LLLPKRDRIG SGNVNDSDDW 240 HIKTKKMKWD ASYVSQSKEQ NQIPLQGRDC LQDTSERDVP VSEIERCDLA ENQMVMEQNW 300 VLEDGHNDYA ALKRYRQNSD DAIHKNQSEI HSNATSMPQD TCQDETHQYS CVGEANNDGG 360 LHRELRISNA DPLDETQHKV SAKEFNCNNS EQDAHIKVPH LSSTDETRQM SNADEGNGLD 420 PENMTDNKRK SVNDSDDCHI RAKNMKWDAF YVLQSIEQNQ LPLYSEDSSE IDVPVSERVR 480 CDLAENQMEM MEEDRGLEDG HDDYTESKRN GQSTYDAIHE SQQENCCNAT SMPRDIFQDE 540 GCQYTCVDET KDDGGLQLEL RASGVAAADE SQHKVSPKVF NNNTDIDFHI KVPHPATTDG 600 PQRKSLADKG KDDCVHCSKP RTSGVASLDE IQQKNSTQQS DCVGEHDSYI KVAYPAFIDG 660 SIADKSKELM DFHFESVTSN DGDGFHDEKI DTAMKKHAFL RFQCTSTHDS SATTVTEKNH 720 SMDCNEGGQL LTCKTSNCPV VVDKNWLCSS AILYEKGNFY CPFCSYSLAL TDYLESKKET 780 SQLERKLNAF VQRELNTNLE NQPKEPVGRL HSKVNNFSMQ FEENHYRHLE EGEENQGNQC 840 EEHVTEVDDV QFHNIIYDKP QEAPSSSCLE VKSMHGKFHV PAGEKKGEEK VVHECISVAG 900 LDWFQNQVPE EGERFYSKAT ESFLVDQGQA GAVTEQEVLQ LHITDDSEEP VHELKVDSVQ 960 IPEDDVKKSN ILNYSVSQRS KSPFTQQATT QLRRKKVPWT EEEEEMLKKG VQEFSCTDET 1020 RLPWKQILEF GYDVFLSGRT PTDLKYKWRN ICMLK

Sequence ? help Back to Top

Protein Sequence Length: 1055 aa Download sequence

MEGMSEHQRA IAWLWVVEGL ATMKQVDVSL LTGTSMLGLF MAFFLAFSDL LGEIGSSLPD  60
QMAKNAKERV ALRCLEEICN GIPSTQNSKV GFDLSQSCES VLKRITDETP ESDFRNAGPG  120
LLKWDIHPFI LHKKAAMPKS ALKQLKDSIL DGTHPHADLL REKSGLTFRS DGDRVSANES  180
NQSLNKSCSS AQNMGVEGNS DCLILENVSK LLEEDKNDEN LLLPKRDRIG SGNVNDSDDW  240
HIKTKKMKWD ASYVSQSKEQ NQIPLQGRDC LQDTSERDVP VSEIERCDLA ENQMVMEQNW  300
VLEDGHNDYA ALKRYRQNSD DAIHKNQSEI HSNATSMPQD TCQDETHQYS CVGEANNDGG  360
LHRELRISNA DPLDETQHKV SAKEFNCNNS EQDAHIKVPH LSSTDETRQM SNADEGNGLD  420
PENMTDNKRK SVNDSDDCHI RAKNMKWDAF YVLQSIEQNQ LPLYSEDSSE IDVPVSERVR  480
CDLAENQMEM MEEDRGLEDG HDDYTESKRN GQSTYDAIHE SQQENCCNAT SMPRDIFQDE  540
GCQYTCVDET KDDGGLQLEL RASGVAAADE SQHKVSPKVF NNNTDIDFHI KVPHPATTDG  600
PQRKSLADKG KDDCVHCSKP RTSGVASLDE IQQKNSTQQS DCVGEHDSYI KVAYPAFIDG  660
SIADKSKELM DFHFESVTSN DGDGFHDEKI DTAMKKHAFL RFQCTSTHDS SATTVTEKNH  720
SMDCNEGGQL LTCKTSNCPV VVDKNWLCSS AILYEKGNFY CPFCSYSLAL TDYLESKKET  780
SQLERKLNAF VQRELNTNLE NQPKEPVGRL HSKVNNFSMQ FEENHYRHLE EGEENQGNQC  840
EEHVTEVDDV QFHNIIYDKP QEAPSSSCLE VKSMHGKFHV PAGEKKGEEK VVHECISVAG  900
LDWFQNQVPE EGERFYSKAT ESFLVDQGQA GAVTEQEVLQ LHITDDSEEP VHELKVDSVQ  960
IPEDDVKKSN ILNYSVSQRS KSPFTQQATT QLRRKKVPWT EEEEEMLKKG VQEFSCTDET  1020
RLPWKQILEF GYDVFLSGRT PTDLKYKWRN ICMLK