PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G20183

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 369aa MW: 40463.6 Da PI: 7.3732

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G20183	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	99.8	4.8e-31	65	225	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssasec.eaesss 79 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak+ i++l+ + s + +++ss Ro06_G20183 65 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLEAAKHDIDQLPPLpmmppapgsygggglihhpS------VlLNVASS 156 689*************************************************************87777777777764333330......33333333 PP TCP 80 ssasnsssg..................kaaksaakskksqksaasa.lnlak.esrakarararertrek 129 s ++n +++ +++k+ + ++++++++ + +++ +s+a+ ar +t+ + Ro06_G20183 157 SVDQNIGEQgfrsslwrptndggdedqENEKDV-EADEADHRKQEGgNVVDHgSSSANNFLMARSSTSTN 225 333322222445555666666666653222222.333333333333044444566666666677766655 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MIKSPNTNEA DVQGPAGNSS THNEAGKISK VTLSSSTSRS SSSTTVAPWM RLSKDPRIVR 60 VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLEAAKH 120 DIDQLPPLPM MPPAPGSYGG GGLIHHPSVL LNVASSSVDQ NIGEQGFRSS LWRPTNDGGD 180 EDQENEKDVE ADEADHRKQE GGNVVDHGSS SANNFLMARS STSTNHPLFF PGLLNNSNTM 240 PNYGFHNWDH DQSPNFPLSH QLRSHGFASQ PTDLHNFNVM TLPSTLSLST GTTQSYFPSH 300 ATADAADHQI DIRRQFNHQM QSSHQNLLAN SVYPSSQSMQ RAAPQNLLSM ITKLAHSSQP 360 NKDQEPPSR

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MIKSPNTNEA DVQGPAGNSS THNEAGKISK VTLSSSTSRS SSSTTVAPWM RLSKDPRIVR  60
VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLEAAKH  120
DIDQLPPLPM MPPAPGSYGG GGLIHHPSVL LNVASSSVDQ NIGEQGFRSS LWRPTNDGGD  180
EDQENEKDVE ADEADHRKQE GGNVVDHGSS SANNFLMARS STSTNHPLFF PGLLNNSNTM  240
PNYGFHNWDH DQSPNFPLSH QLRSHGFASQ PTDLHNFNVM TLPSTLSLST GTTQSYFPSH  300
ATADAADHQI DIRRQFNHQM QSSHQNLLAN SVYPSSQSMQ RAAPQNLLSM ITKLAHSSQP  360
NKDQEPPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	8e-41	TCP family protein