PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G20141
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 367aa    MW: 39593.4 Da    PI: 7.6479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G20141genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar   ++Rt+ q+ s+ qky
      Ro06_G20141 115 PWTEEEHRMFLIGLQKLGKGDWRGIARNYVTTRTPTQVASHAQKY 159
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MTRRCSHCSN NGHNSRTCPS RGGGASSCSS GAAGGGGGVK LFGVRLTDGS IIKKSASMGN  60
LSSMAAHYQS SSPNPDSPSN DPLHDPVHDR DGYLSDDPAH ASSTNRRGDR KKGIPWTEEE  120
HRMFLIGLQK LGKGDWRGIA RNYVTTRTPT QVASHAQKYF IRQSNSTRRK RRSSLFDMAP  180
DMAMDPPHMP EEQALLPSCQ EERESEDSNL LPSLNLSLGS ECSRPMESTH EEKVIIEPDN  240
QPVMGLNGYP NGFPPIIPGF IPAYLPFPFP VWPPSAGPSI IENGGKGSHH QQVLKPVPIL  300
PKEPVNVDAL VGMSQLSLGE TERVQSNPSP LSLTLLGEPS RQSAFHPNAP ASEPDLSKGK  360
TSVIQAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-86MYB_related family protein