PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G19728
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 234aa    MW: 26527.8 Da    PI: 8.2018
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G19728genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed+++++++sw+e+g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+kg+k+ l++i+
   Ro06_G19728  16 FLLKTYMLVEDPATDNVVSWNEDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNEKFRKGEKDGLCEIR 103
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Ro06_G19728 104 RRKA 107
                   *985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MEGVLEYVRK SSPPPFLLKT YMLVEDPATD NVVSWNEDGS AFVVWQPAEF ARDLLPTLFK  60
HSNFSSFVRQ LNTYGFRKVA TSRWEFCNEK FRKGEKDGLC EIRRRKAWAN KQHSNAGGGQ  120
GIAAQDDQSD ERSSSTSSSS EYSSLIDENK RLKMENGVLS GELTTMKNKC KELFDLVAKC  180
GGRDSEKGQE EEHDQRPKLF GVRLEVEGER ERKRKRAAET ISQSATILLS QACK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.16e-56HSF family protein