PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G19541

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 410aa MW: 46336.3 Da PI: 9.4507

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G19541	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.2	3.9e-25	134	178	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Ro06_G19541 134 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEA 178 79****************************************997 PP
2	QLQ	55.6	1.7e-19	68	98	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+q+L++Q+l++Ky+++++P+P +L+ Ro06_G19541 68 PFTATQWQELEHQALIFKYMVSGVPIPTDLV 98 9****************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MSSADRETGA AIRSSYPVPR GTCLGSLHNR PAHVGPGRGH MWAHTHVSMA EQEQRSNRVA 60 VIIRAVYPFT ATQWQELEHQ ALIFKYMVSG VPIPTDLVYS FKRRLDSSSI SSRLFPHNPF 120 GWGCYEMGFG RKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN RSRKPVEASS 180 SSSTTNTTPT ITTPPEYNPA SIHKSLSKTS PSMFSSSANT ETAHTQHHQS SPLYPFLSRP 240 HGSGLSSHNN TTANPQLFLN SGSYVNEADH RDYRYLHGAK EGVDHELAFF PAESSANARS 300 LMSSYKGYSS QSQFQSLTDH YPQQQSQDEQ HCYVLGTDFK SSRPIKTENK EADQTQKSLH 360 HFFGDWPPKT TDTWLDLAPN SRLHNDWELG PCSFLKNQNL NIQTTKSNKK

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MSSADRETGA AIRSSYPVPR GTCLGSLHNR PAHVGPGRGH MWAHTHVSMA EQEQRSNRVA  60
VIIRAVYPFT ATQWQELEHQ ALIFKYMVSG VPIPTDLVYS FKRRLDSSSI SSRLFPHNPF  120
GWGCYEMGFG RKIDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGRN RSRKPVEASS  180
SSSTTNTTPT ITTPPEYNPA SIHKSLSKTS PSMFSSSANT ETAHTQHHQS SPLYPFLSRP  240
HGSGLSSHNN TTANPQLFLN SGSYVNEADH RDYRYLHGAK EGVDHELAFF PAESSANARS  300
LMSSYKGYSS QSQFQSLTDH YPQQQSQDEQ HCYVLGTDFK SSRPIKTENK EADQTQKSLH  360
HFFGDWPPKT TDTWLDLAPN SRLHNDWELG PCSFLKNQNL NIQTTKSNKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	1e-64	GRF family protein