PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G18814

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 703aa MW: 77534.8 Da PI: 7.6327

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G18814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.3	1.4e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + +++ Ro06_G18814 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGD 214 89**************************996555555..89*******************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Ro06_G18814 215 LCVGIRRA 222 9**997 PP
2	Auxin_resp	113	2.8e-37	290	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ ++ +rWp+S+Wr+L+ Ro06_G18814 290 AATLASNGQPFEVVYYPRASTPEFCVKASLVKAALQIRWCPGMRFKMAFETEDSSRISWfMGTISSVQVAEHMRWPESPWRLLQ 373 6899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPLVNAKV FYFPQGHAEH ACGPVDFRNC 60 PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPLSSNEVG YEDNGIGGLN GAESQDKPAS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT 180 PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG 240 GNCAMPYGGF SAYLREDEGK LTRNGNGNGS NSNGSLMGKG KVGPESVLEA ATLASNGQPF 300 EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE 360 HMRWPESPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPHPD 420 FPFEGQLPMP TFSGNHHLLG TSSPFGCLPD KTPAGMQGAR HAHYGLSLSD IHLNKLQSGL 480 FPASFLPLDH VATPTKFSSN TMIQRPTMSE NVSCLLTMAH SPQSSKKPDH VKPPQLMLFG 540 QPILTEQQIS LSSSGDTVSP VLTGNSSSDG SGDKMANHSD NSGSAIHQQS IQERSTGERF 600 HWYKDTRHEA EPNLETGHCK VFMESEDVGR TLDFSQFKSY DELYKKLADM FGIKNSETLN 660 HVLYRDAKGA VKHIGDEPFS DFVKTARRLT ILMDSGSNNL SQS

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MITFMDSKEK LKEGEKCLDP QLWHACAGGM VQMPLVNAKV FYFPQGHAEH ACGPVDFRNC  60
PRVPPYIFCR VSAIKFMADP ETDEVYAKIR LVPLSSNEVG YEDNGIGGLN GAESQDKPAS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGET WKFRHIYRGT  180
PRRHLLTTGW STFVNHKKLV AGDSIVFLRA ENGDLCVGIR RAKRGIGGGP ESSSGWNPAG  240
GNCAMPYGGF SAYLREDEGK LTRNGNGNGS NSNGSLMGKG KVGPESVLEA ATLASNGQPF  300
EVVYYPRAST PEFCVKASLV KAALQIRWCP GMRFKMAFET EDSSRISWFM GTISSVQVAE  360
HMRWPESPWR LLQVSWDEPD LLQNVKRVSP WLVELVSNMP AIHLTPFSPP RKKMRLPHPD  420
FPFEGQLPMP TFSGNHHLLG TSSPFGCLPD KTPAGMQGAR HAHYGLSLSD IHLNKLQSGL  480
FPASFLPLDH VATPTKFSSN TMIQRPTMSE NVSCLLTMAH SPQSSKKPDH VKPPQLMLFG  540
QPILTEQQIS LSSSGDTVSP VLTGNSSSDG SGDKMANHSD NSGSAIHQQS IQERSTGERF  600
HWYKDTRHEA EPNLETGHCK VFMESEDVGR TLDFSQFKSY DELYKKLADM FGIKNSETLN  660
HVLYRDAKGA VKHIGDEPFS DFVKTARRLT ILMDSGSNNL SQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein