PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G18350
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARR-B
Protein Properties Length: 720aa    MW: 80914.7 Da    PI: 5.1813
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G18350genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like65.87.8e-21210258251
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                   r+ W+ eLH++F+++  +L G++kA+Pk+ilelm+vk+Lt+++v+SHLQ
  Ro06_G18350 210 RRITWSRELHKKFLDVYYHL-GPDKAVPKKILELMDVKDLTRSQVASHLQ 258
                  699*****************.***************************** PP
2Myb_DNA-binding27.47.8e-09213259346
                      SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 
                       W+ e++++++d+   lG++   +k+I + m  k +t+ q+ s++q+
      Ro06_G18350 213 TWSRELHKKFLDVYYHLGPDkaVPKKILELMDvKDLTRSQVASHLQS 259
                      6*****************99*************************95 PP
3Response_reg59.22.2e-20281291105
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +++l+  l++ +y ev++a ++ +ale+l+e++  +Dl++ D++mp+mdG++ll+ +  e  +lp+i   + g+ e++++ ++ Ga 
   Ro06_G18350  28 VLAVDDNPICLKNLEFTLRQCHY-EVTTANHAFQALEILRENRnkFDLVISDVQMPDMDGFQLLQLLGDEM-DLPVI---SDGDTELIKKGISHGAC 119
                   799********************.***************999889**********************7654.79998...678999*********** PP

                   EEEESS--HH CS
  Response_reg  96 dflsKpfdpe 105
                    +l+Kp++ e
   Ro06_G18350 120 CYLEKPVKVE 129
                   ******9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MDAEDQLGGS VDGDQNGAID RFPEGMRVLA VDDNPICLKN LEFTLRQCHY EVTTANHAFQ  60
ALEILRENRN KFDLVISDVQ MPDMDGFQLL QLLGDEMDLP VISDGDTELI KKGISHGACC  120
YLEKPVKVEV FKTIWQHVFR RKKLSSKDQC MSSDQDKVPN GTGEDEQVSS PSTSDQNGKH  180
KRKRQDQSED DEEGGDDERE NEEPSTQKNR RITWSRELHK KFLDVYYHLG PDKAVPKKIL  240
ELMDVKDLTR SQVASHLQSQ WPLRPPFLRS YFVLQKYREQ LKKGTNDQGK QRSSMVGRGR  300
KDFSYMLRTG PVDESGLGRL SDPAPVSSYT PHHQMLCRSN SPTGFRMRGI NSSSHLVRPG  360
QSQNYCNSIN NVANLQPCVL TNQIRNLSPV TQTPVELNQL QQRNSTVDIG QSTPNNGLTA  420
TFPYKRLPGS SIRYDCNTLM IQGNPQQQHG TQVFGNQSSL GVNSLNPNNG YGESWHGGIQ  480
LSQFPSNALL RSEASNHGQL PANNLGVSSS TPQIGNNPNA FSSISALSAP VEELRENIHI  540
QNQGSVVPTT YYTPKQWWED HKQDDNHNLN PPSVVSTNGF VDPLTQSLDQ NDAVRSMNSS  600
LFEQFNGGNT TIVQRLEVEN STMQTKIDPN EDSLLLEQAK LNEGFVQNSF EALNNQEQQE  660
NEYDFLDGEF GYYAIQEQKE NNEYDLLDGD YLLTLLHCVS KASLVCCFLA KRMASTAVDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-73ARR-B family protein