PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G17617

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 526aa MW: 57321.9 Da PI: 6.5152

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G17617	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	163	222	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ Ro06_G17617 163 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNT 222 7899******************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MKRIKEAEEE RESVAKMSEA RDPAIKLFGK TIPLPEFPLL LSSSGPPDSL GAPDPPSATL 60 LSEDADRAAS SSNSSSPGQV NTDTRGEEKE VNKDTLGEKA IQNKEEDEVL PLSSKELTNP 120 DAASRIGENP KTPIDKTTAL KTLKAEEEQS ETSNSQEKTL KKPDKILPCP RCNSMDTKFC 180 YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK NTPSQYRHIT VSEALPNARP 240 EVLNGVHHPS LQSNGTVLTF CPDTPLCESM TSVLQLADKN VQNCTPNGFH KPEGLMIPAS 300 YGGGVSGDDH SNRSTVTDSN SKEEASKTGS QEQVMQNYPG FPPQIPCFPG APWPYPWNPP 360 QWSSPVSPPA FCPPGYPMPF YPAAAYWGCA VQGTWNMPWL PQPSSPNQTA PSSGSNSPTL 420 GKHSRDENSL KQTSSEVEEP PKEKNAERCL WIPKTLRIDD PGEAARSSIW ATLGIKNDKA 480 DSISSGGLFK AFRSKGDEKN HVAEASPVLQ ANPAALSRSL KFQESS

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MKRIKEAEEE RESVAKMSEA RDPAIKLFGK TIPLPEFPLL LSSSGPPDSL GAPDPPSATL  60
LSEDADRAAS SSNSSSPGQV NTDTRGEEKE VNKDTLGEKA IQNKEEDEVL PLSSKELTNP  120
DAASRIGENP KTPIDKTTAL KTLKAEEEQS ETSNSQEKTL KKPDKILPCP RCNSMDTKFC  180
YYNNYNVNQP RHFCKNCQRY WTAGGTMRNV PVGAGRRKNK NTPSQYRHIT VSEALPNARP  240
EVLNGVHHPS LQSNGTVLTF CPDTPLCESM TSVLQLADKN VQNCTPNGFH KPEGLMIPAS  300
YGGGVSGDDH SNRSTVTDSN SKEEASKTGS QEQVMQNYPG FPPQIPCFPG APWPYPWNPP  360
QWSSPVSPPA FCPPGYPMPF YPAAAYWGCA VQGTWNMPWL PQPSSPNQTA PSSGSNSPTL  420
GKHSRDENSL KQTSSEVEEP PKEKNAERCL WIPKTLRIDD PGEAARSSIW ATLGIKNDKA  480
DSISSGGLFK AFRSKGDEKN HVAEASPVLQ ANPAALSRSL KFQESS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	7e-96	Dof family protein