PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G17326

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 612aa MW: 68946.3 Da PI: 7.147

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G17326	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.3	3e-12	166	206	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +++++g +R + qc+++++ Ro06_G17326 166 WNADEEMLLLEGIEMYGFGNWTEVSEHVG-TRRRQQCIDHYN 206 ***************************.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence
FQRNTENEQY CCVGRKLEKN CQGHCAEKVF LYGPFQGFTN FRVSHLLPAI RSMGRSRAVA 60 HSAAGDSNQS RGKRKRTASG AEPAENSSTG QKGLAQELSE PKGAFYHCNY CQKDISGKTR 120 IKCGVCPDFD LCIECFSVGA EVQPHKCNHP YRVMDNLSFP LICPDWNADE EMLLLEGIEM 180 YGFGNWTEVS EHVGTRRRQQ CIDHYNAIYM NSPCFPLPDM SLVMGKSRED LLALAKGSDE 240 IKKELPILME ITLKEVSPLS AGVKCEEPKK TSASKSSSHS TADVASGLIS GAGKKASNKL 300 QVKDEPKVTK VEESQRSIGE KKLRSLVEEG PSMTELSGYN YKRQEFEIEY DNDAEQILAD 360 MEFQDTDTDA DRELKLRVLH VYGKRLDERK RRKDFVLERN LLYPDPLEKN LSPEVREIYQ 420 RFKVFMRFHS NEDHKELLKS IIEEQQIVKR ILDLQEARAA GCRTGEEASR YLEQKRKNET 480 EESSLRIKEN SQASVSGKLS QISPRGAVRG SAGLHPGIKD LSLTTQAISS ALDEWDISGL 540 VGADLLSETE KTLCCEMRIL PSHYLYMLQT ISTEILNGNV KKKSDAHSLF KVEPSKVDRV 600 YDMVIRKGLT LA

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence

FQRNTENEQY CCVGRKLEKN CQGHCAEKVF LYGPFQGFTN FRVSHLLPAI RSMGRSRAVA  60
HSAAGDSNQS RGKRKRTASG AEPAENSSTG QKGLAQELSE PKGAFYHCNY CQKDISGKTR  120
IKCGVCPDFD LCIECFSVGA EVQPHKCNHP YRVMDNLSFP LICPDWNADE EMLLLEGIEM  180
YGFGNWTEVS EHVGTRRRQQ CIDHYNAIYM NSPCFPLPDM SLVMGKSRED LLALAKGSDE  240
IKKELPILME ITLKEVSPLS AGVKCEEPKK TSASKSSSHS TADVASGLIS GAGKKASNKL  300
QVKDEPKVTK VEESQRSIGE KKLRSLVEEG PSMTELSGYN YKRQEFEIEY DNDAEQILAD  360
MEFQDTDTDA DRELKLRVLH VYGKRLDERK RRKDFVLERN LLYPDPLEKN LSPEVREIYQ  420
RFKVFMRFHS NEDHKELLKS IIEEQQIVKR ILDLQEARAA GCRTGEEASR YLEQKRKNET  480
EESSLRIKEN SQASVSGKLS QISPRGAVRG SAGLHPGIKD LSLTTQAISS ALDEWDISGL  540
VGADLLSETE KTLCCEMRIL PSHYLYMLQT ISTEILNGNV KKKSDAHSLF KVEPSKVDRV  600
YDMVIRKGLT LA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	394	RKRRKD