PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G15509
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 164aa    MW: 18194.2 Da    PI: 9.7686
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G15509genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-052244123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C +C k+Fs+   L  H++ H
  Ro06_G15509 22 YRCRHCEKTFSNGQALGGHQNAH 44
                 9***************9999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MAPSSEANSV NSTATSIPGE VYRCRHCEKT FSNGQALGGH QNAHRGVHRK AMRRIADAMG  60
SLRNPQQLAA GPSSFQSGEV NQVVHLRRTS EPEKPREGKP RDFLEEWKDK AAADSDSEGT  120
VSESLVPKRS HYKRKGEDVN TPQKKHDLDL ELKLGYKQES KGMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-08C2H2 family protein