PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G15270

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 516aa MW: 56536.8 Da PI: 8.6745

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G15270	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ro06_G15270 90 FVCEICKKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.1	0.00061	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Ro06_G15270 166 WKCDKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP
3	zf-C2H2	11.3	0.0011	196	214	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Ro06_G15270 196 DCGTVFSRRDSFITHRAFC 214 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MSIITGSGVG SFSSGNTTSA EEAVLQQQEE LLNHFHGSNS LQEIAINGIS APQQQHPPPA 60 KKKRNLPGTP DPSAEVIALS PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RSSTEIRKRV YVCPEPACVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSKTCGT REYKCDCGTV FSRRDSFITH RAFCDAIAEE NKTVLNQGQC IPVRSNNILG 240 QQNTQQGGDQ VVSGSELMIS ASMTMTNNEA ATKPSTRSST SDQFDTKIPN LTLVPQEVAS 300 NMSSTPTSGL NNNSLSSSTS SALFHNHHGH QVLLPSSISG FSSATELLQK AAQMGATMSS 360 NNSSGMSMAP STYGDEFTRY VNNQFMQHKN GGNIIPVQET SSSQFFGASN GNMGMFSGLL 420 FDQNNNNGVL MKNMEHSVNG GNNNNTNNSF SLHGKNVSSG GDTMTLDFLG IGRGGNRPES 480 FHHHQKRKVV HDEQQRQNKQ EDGDDDQLGF GVWSWS

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MSIITGSGVG SFSSGNTTSA EEAVLQQQEE LLNHFHGSNS LQEIAINGIS APQQQHPPPA  60
KKKRNLPGTP DPSAEVIALS PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RSSTEIRKRV YVCPEPACVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKTCGT REYKCDCGTV FSRRDSFITH RAFCDAIAEE NKTVLNQGQC IPVRSNNILG  240
QQNTQQGGDQ VVSGSELMIS ASMTMTNNEA ATKPSTRSST SDQFDTKIPN LTLVPQEVAS  300
NMSSTPTSGL NNNSLSSSTS SALFHNHHGH QVLLPSSISG FSSATELLQK AAQMGATMSS  360
NNSSGMSMAP STYGDEFTRY VNNQFMQHKN GGNIIPVQET SSSQFFGASN GNMGMFSGLL  420
FDQNNNNGVL MKNMEHSVNG GNNNNTNNSF SLHGKNVSSG GDTMTLDFLG IGRGGNRPES  480
FHHHQKRKVV HDEQQRQNKQ EDGDDDQLGF GVWSWS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-97	C2H2 family protein