PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G13053

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 631aa MW: 70412.6 Da PI: 10.0717

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G13053	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.4e-11	14	65	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W t+E++ll++av+++G+++W+++a+++ ++t+ ck ++++++ Ro06_G13053 14 TWGTWEELLLACAVHRYGTHCWDSVAAEIRkrssnlHHLTPQTCKRKFHDLR 65 6*****************************9999999999999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MDKPNFPEKQ TITTWGTWEE LLLACAVHRY GTHCWDSVAA EIRKRSSNLH HLTPQTCKRK 60 FHDLRRRFNH QNDAVCDDAA SPIPWLDQLR QLRLDELRRD VQRYDLSIVS LQLKVERLKE 120 VRDQNSEPVE PAAAEEIGAV EKLSNPVVED SCNGSSDSVV KEPAVAESEK VNSAELRESV 180 AESKGGEEGT KESQSSSEVQ SWASLSRKMG QEPKPSEPVE PDQEDQSPAM KQVPVESQPL 240 VDLLEILRSQ KCASFFERRL HSQDTHIYTN MIRQHTDFEL VQTRLGGGWY SSCKSKFFRD 300 LLLICKNAVV FFGKNSPEYK AACELQLLVL KEMARKDSKQ DPSPKEETLT PPALPLKPET 360 ESSESLLAKS KLSIPLTACR KRSSIKARAS TSSSAQDIKK EQKTTSLHDV KPAISWKQKE 420 ESSDEVEEKL PVTKKRRKER VRSNSRNDSN KNSRIRSDTN KEKNPDANAN ANVGSSTKAM 480 ISNENSESIA ETEKKSNTNT SGKRQSAEKF LSRMKRNSTS NNKSDTLKIT ENDSKGGAEQ 540 RKNGNGKGNA QKGAEQRKNG NCKGSAQKEA AEQRKSGNGK GSAQKEQASR RGSGGRQAAK 600 EQGSPTKRSV GRPSKRAAET ARAAPAKRRR Y

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MDKPNFPEKQ TITTWGTWEE LLLACAVHRY GTHCWDSVAA EIRKRSSNLH HLTPQTCKRK  60
FHDLRRRFNH QNDAVCDDAA SPIPWLDQLR QLRLDELRRD VQRYDLSIVS LQLKVERLKE  120
VRDQNSEPVE PAAAEEIGAV EKLSNPVVED SCNGSSDSVV KEPAVAESEK VNSAELRESV  180
AESKGGEEGT KESQSSSEVQ SWASLSRKMG QEPKPSEPVE PDQEDQSPAM KQVPVESQPL  240
VDLLEILRSQ KCASFFERRL HSQDTHIYTN MIRQHTDFEL VQTRLGGGWY SSCKSKFFRD  300
LLLICKNAVV FFGKNSPEYK AACELQLLVL KEMARKDSKQ DPSPKEETLT PPALPLKPET  360
ESSESLLAKS KLSIPLTACR KRSSIKARAS TSSSAQDIKK EQKTTSLHDV KPAISWKQKE  420
ESSDEVEEKL PVTKKRRKER VRSNSRNDSN KNSRIRSDTN KEKNPDANAN ANVGSSTKAM  480
ISNENSESIA ETEKKSNTNT SGKRQSAEKF LSRMKRNSTS NNKSDTLKIT ENDSKGGAEQ  540
RKNGNGKGNA QKGAEQRKNG NCKGSAQKEA AEQRKSGNGK GSAQKEQASR RGSGGRQAAK  600
EQGSPTKRSV GRPSKRAAET ARAAPAKRRR Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	434	438	KKRRK
2	434	463	KKRRKERVRSNSRNDSNKNSRIRSDTNKEK
3	435	464	KKRRKERVRSNSRNDSNKNSRIRSDTNKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	2e-64	MYB_related family protein