PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11885

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 517aa MW: 57717.5 Da PI: 4.8403

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11885	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	104.8	7.2e-33	67	190	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT......................XT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks......................ke 76 Fl+k++++++d++l+ +isw ++g sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y+++ ++ ++ +s ++ Ro06_G11885 67 FLSKTFDLVDDPSLDLIISWGSTGGSFVVWDPVEFSRLVLPRNFKHNNFSSFVRQLNTYEWRLITAKRISSPLsvyqrggggsslagriqgfrkiDT 163 9***************************************************************9987444899999999999988877765449 PP TSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 77 kiweFkhksFkkgkkellekikrkkse 103 + weF+++ F++gk++ll++i+r+ks+ Ro06_G11885 164 DRWEFANEAFQRGKRHLLKNIRRRKSS 190 **********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MNPKDHSLQK SPPTSPELDP EMLEPPLLDF EAFSAVNSSG AFEVGKNEYV GVPQPLQSLQ 60 GNPIPPFLSK TFDLVDDPSL DLIISWGSTG GSFVVWDPVE FSRLVLPRNF KHNNFSSFVR 120 QLNTYEWRLI TAKRISSPLS VYQRGGGGSS LAGRIQGFRK IDTDRWEFAN EAFQRGKRHL 180 LKNIRRRKSS QSLQIGSFIG TSAEAGRPGL EGEIETLRNQ RSLLMQEVVD LQQQQRGTVH 240 HMKEVNERLQ SAEQRQTQMV SFLAKLLQNP AFLARLQQKS GQKGIGSPRM RRKFVKQHEP 300 ELGTSDSYME GQIVKYQPAW RNHTMSSSVP DLNPVPIEQS PDHGMPFQFE NVAFDGLIVS 360 DELEVTQGFS KTPEQEGEGA SSMGTEDPLF KGKSVLSQQE VNPESYVSFQ EDLLKEKTFS 420 DLCFSGTESM VKPDDIWSMG FDASAGMSSS SHGFWGNPIN YDVPEMGMTE LDIWDIGQLQ 480 AAGGSGIDKW PADESTFDER ASQDGQQKDD IAKTNDP

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MNPKDHSLQK SPPTSPELDP EMLEPPLLDF EAFSAVNSSG AFEVGKNEYV GVPQPLQSLQ  60
GNPIPPFLSK TFDLVDDPSL DLIISWGSTG GSFVVWDPVE FSRLVLPRNF KHNNFSSFVR  120
QLNTYEWRLI TAKRISSPLS VYQRGGGGSS LAGRIQGFRK IDTDRWEFAN EAFQRGKRHL  180
LKNIRRRKSS QSLQIGSFIG TSAEAGRPGL EGEIETLRNQ RSLLMQEVVD LQQQQRGTVH  240
HMKEVNERLQ SAEQRQTQMV SFLAKLLQNP AFLARLQQKS GQKGIGSPRM RRKFVKQHEP  300
ELGTSDSYME GQIVKYQPAW RNHTMSSSVP DLNPVPIEQS PDHGMPFQFE NVAFDGLIVS  360
DELEVTQGFS KTPEQEGEGA SSMGTEDPLF KGKSVLSQQE VNPESYVSFQ EDLLKEKTFS  420
DLCFSGTESM VKPDDIWSMG FDASAGMSSS SHGFWGNPIN YDVPEMGMTE LDIWDIGQLQ  480
AAGGSGIDKW PADESTFDER ASQDGQQKDD IAKTNDP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03720.1	1e-96	HSF family protein