PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G11876

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 577aa MW: 65786.8 Da PI: 6.272

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G11876	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.5e-29	126	211	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Ro06_G11876 126 RWPRQETLTLLEIRSRLDYKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 211 8*********************************998***************************98..55667*****85 PP
2	trihelix	50.5	5.5e-16	414	493	2	76
trihelix 2 WtkqevlaLiearremeerlrr....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikeg..ekkrtsess 76 W++ e+ L+++r +me+r+++ g+ ++ lWee+++km g+ers Ck+kwe++n + +k+ e +kkr++++s Ro06_G11876 414 WPECEINRLMQLRGSMESRFSTnqrgGCVEEILWEEIAAKMNCLGYERSGMVCKDKWESIN-YVRKCSEElfNKKRKENNS 493 *******************8444458******************************8.5566655422334433333 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MEMEDQYGLG DLRQLMNGTG RSHFPSIQTP TELFPSHHHH RPQLLAPAQH HHHHQQQHPY 60 EIMMMGRVQT AHDIMPRGIH EFRSAADSAG GVACANNTVA ATSSLSGGGG LEAEGGCLGG 120 DGGSGRWPRQ ETLTLLEIRS RLDYKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF 180 ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGETSNNI AASSLPPDQT HFVGSNNIIN 240 NNNLRYQTQP NHQDTTTATT YQSTQSLSNS SDFEDSSSSE DNDVAAPMDD EVLEMKRMRK 300 RRGWKAKIKD FIDAQMRKMM EKQEEWLEKL MGTLEQKERE RMLREDEWRK QEAGRVEREQ 360 QFWAKERAWI EARDKALMDA LQKLTGSSTS HEVKASSSTP ENDHEDIVSE QETWPECEIN 420 RLMQLRGSME SRFSTNQRGG CVEEILWEEI AAKMNCLGYE RSGMVCKDKW ESINYVRKCS 480 EELFNKKRKE NNSRSSSCYF GNNESNSSLY SSQGGVYASC EMNNHEQGND GSPPSNNANV 540 GSAAVVQETC FPFLMGEGDN LWENYGLKLS KGSQNQE

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MEMEDQYGLG DLRQLMNGTG RSHFPSIQTP TELFPSHHHH RPQLLAPAQH HHHHQQQHPY  60
EIMMMGRVQT AHDIMPRGIH EFRSAADSAG GVACANNTVA ATSSLSGGGG LEAEGGCLGG  120
DGGSGRWPRQ ETLTLLEIRS RLDYKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRQDG KHYRFFRQLE ALYGETSNNI AASSLPPDQT HFVGSNNIIN  240
NNNLRYQTQP NHQDTTTATT YQSTQSLSNS SDFEDSSSSE DNDVAAPMDD EVLEMKRMRK  300
RRGWKAKIKD FIDAQMRKMM EKQEEWLEKL MGTLEQKERE RMLREDEWRK QEAGRVEREQ  360
QFWAKERAWI EARDKALMDA LQKLTGSSTS HEVKASSSTP ENDHEDIVSE QETWPECEIN  420
RLMQLRGSME SRFSTNQRGG CVEEILWEEI AAKMNCLGYE RSGMVCKDKW ESINYVRKCS  480
EELFNKKRKE NNSRSSSCYF GNNESNSSLY SSQGGVYASC EMNNHEQGND GSPPSNNANV  540
GSAAVVQETC FPFLMGEGDN LWENYGLKLS KGSQNQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-130	Trihelix family protein