PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro06_G11875
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 268aa    MW: 29184.7 Da    PI: 6.4001
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro06_G11875genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-162271255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  y+GVr ++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Ro06_G11875 22 TYRGVRSRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAALALKG 71
                 69****777.8*********94....468***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MQPTPNTKSS RSSSTAPGRH PTYRGVRSRS SGKWVSEIRE PKKPNRIWLG TFPTPEMAAV  60
AYDVAALALK GQDAELNFPN SASSLPVPAS TSSRDIQAAA TSAAAAIGAA AAAMGVGNHA  120
TSSRQSAEGS HGHVLNDHEF VDEDLIFDMP NVLMNMAEGM LLSPPRLDIA GDHDHYDNQT  180
YVDMADFTEM NIGFQPTRKI VIQFEQYENI VRRAPTFPSC SPVTEPDVRG IPSSGRKYQR  240
MSRMDVDSSP SFDRLVMQQS SAQLPIYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-46ERF family protein